Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0140 ATGGACGGTGGAGATGAAGAAAGAGATCGTACAAGGAAGAGGTGGGCGGCCCCCATGTTAGAGAATCAGAGGCGGTACAAAGGAATAAGGATGAGGAAGTGGGGGAAATGGGTGGCGGAGATTCGAGAGCCGAATAAGCGCTCTAGAATATGGCTTGGCTCCTACTCGTCTCCGGTCGCTGCGGCTCGAGCTTACGACACCGCGGTTTTCCATCTAAGGGGACCCTCGGCTCGGCTTAATTTTCCTGAATTGTTAGCTGGGGAAAGGCGGGGGAAGGATCATGATCAGGAGGACGATATGTCGGCTGCTTCGATTAGGAAGAAAGCTACTGAGGTAGGAGCTCGTGTCGATGCTTTAGAGAGTTCACTACATCATCATCATCAACATCCTCACCGTCCAAATCATGATCATGACCATGCATCGACGGTGGTTAAGGAGTTTAAGTCTTGTGGTGAGTTATTAACTCGGGTCGACTTGAACAAGTTGCCCGACCCGGAAGATATAGATGGTGAGTGGGAGAGAAACTATTGA 531 50.47 MDGGDEERDRTRKRWAAPMLENQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAGERRGKDHDQEDDMSAASIRKKATEVGARVDALESSLHHHHQHPHRPNHDHDHASTVVKEFKSCGELLTRVDLNKLPDPEDIDGEWERNY 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 740221 741091 - Conep08aG0014200.1 Cone8ag0140 442689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0140 176 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0140 176 CDD AP2 25 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0140 176 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0140 176 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Cone8ag0140 176 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
Cone8ag0140 176 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0140 176 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0140 176 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0140 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 172 - -
Cone8ag0140 176 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0140 Cone-Chr8:740221 Cone4ag1483 Cone-Chr4:11619194 1.91E-20 dispersed
Cone12ag0140 Cone-Chr12:726874 Cone8ag0140 Cone-Chr8:740221 5.31E-99 wgd
Cone17ag0855 Cone-Chr17:6783221 Cone8ag0140 Cone-Chr8:740221 8.29E-49 wgd
Cone20ag0201 Cone-Chr20:868165 Cone8ag0140 Cone-Chr8:740221 4.75E-48 wgd
Cone4ag1590 Cone-Chr4:12138815 Cone8ag0140 Cone-Chr8:740221 6.78E-46 wgd
Cone6ag1406 Cone-Chr6:11316885 Cone8ag0140 Cone-Chr8:740221 3.38E-70 wgd
Cone7ag1360 Cone-Chr7:9870629 Cone8ag0140 Cone-Chr8:740221 6.49E-48 wgd
Cone8ag0140 Cone-Chr8:740221 Cone9ag1335 Cone-Chr9:10025640 7.04E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46623 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0140 K09286 - csv:101214481 217.238