Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag0140 | ATGGACGGTGGAGATGAAGAAAGAGATCGTACAAGGAAGAGGTGGGCGGCCCCCATGTTAGAGAATCAGAGGCGGTACAAAGGAATAAGGATGAGGAAGTGGGGGAAATGGGTGGCGGAGATTCGAGAGCCGAATAAGCGCTCTAGAATATGGCTTGGCTCCTACTCGTCTCCGGTCGCTGCGGCTCGAGCTTACGACACCGCGGTTTTCCATCTAAGGGGACCCTCGGCTCGGCTTAATTTTCCTGAATTGTTAGCTGGGGAAAGGCGGGGGAAGGATCATGATCAGGAGGACGATATGTCGGCTGCTTCGATTAGGAAGAAAGCTACTGAGGTAGGAGCTCGTGTCGATGCTTTAGAGAGTTCACTACATCATCATCATCAACATCCTCACCGTCCAAATCATGATCATGACCATGCATCGACGGTGGTTAAGGAGTTTAAGTCTTGTGGTGAGTTATTAACTCGGGTCGACTTGAACAAGTTGCCCGACCCGGAAGATATAGATGGTGAGTGGGAGAGAAACTATTGA | 531 | 50.47 | MDGGDEERDRTRKRWAAPMLENQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAGERRGKDHDQEDDMSAASIRKKATEVGARVDALESSLHHHHQHPHRPNHDHDHASTVVKEFKSCGELLTRVDLNKLPDPEDIDGEWERNY | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 740221 | 741091 | - | Conep08aG0014200.1 | Cone8ag0140 | 442689 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag0140 | 176 | Gene3D | AP2/ERF domain | 24 | 83 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0140 | 176 | CDD | AP2 | 25 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0140 | 176 | SMART | rav1_2 | 25 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0140 | 176 | FunFam | Ethylene-responsive transcription factor 2 | 24 | 83 | - | - | |
Cone8ag0140 | 176 | SUPERFAMILY | DNA-binding domain | 25 | 83 | IPR016177 | GO:0003677(InterPro) | |
Cone8ag0140 | 176 | Pfam | AP2 domain | 25 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0140 | 176 | PRINTS | Ethylene responsive element binding protein signature | 64 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0140 | 176 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0140 | 176 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 16 | 172 | - | - | |
Cone8ag0140 | 176 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone8ag0140 | Cone-Chr8:740221 | Cone4ag1483 | Cone-Chr4:11619194 | 1.91E-20 | dispersed | |
Cone12ag0140 | Cone-Chr12:726874 | Cone8ag0140 | Cone-Chr8:740221 | 5.31E-99 | wgd | |
Cone17ag0855 | Cone-Chr17:6783221 | Cone8ag0140 | Cone-Chr8:740221 | 8.29E-49 | wgd | |
Cone20ag0201 | Cone-Chr20:868165 | Cone8ag0140 | Cone-Chr8:740221 | 4.75E-48 | wgd | |
Cone4ag1590 | Cone-Chr4:12138815 | Cone8ag0140 | Cone-Chr8:740221 | 6.78E-46 | wgd | |
Cone6ag1406 | Cone-Chr6:11316885 | Cone8ag0140 | Cone-Chr8:740221 | 3.38E-70 | wgd | |
Cone7ag1360 | Cone-Chr7:9870629 | Cone8ag0140 | Cone-Chr8:740221 | 6.49E-48 | wgd | |
Cone8ag0140 | Cone-Chr8:740221 | Cone9ag1335 | Cone-Chr9:10025640 | 7.04E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46623 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag0140 | K09286 | - | csv:101214481 | 217.238 |