Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0143 ATGCAGCAGATACCGTTCGCTCTCGATTCATTTCTCCAATCCGCTTCTTCACATAGATCGCCATTGTTGATCTACTTCAAATTTTCGAAGCTTTCAAAATCACCGGAGCACGAAATCCGCTTACTGTTTTCTTCACAGGTCGCGCTTTTCACATTGTACATGAATTCTGATACTCCTGACTCATCATCTCACCCCCCTGCCAAAGATTATAGTATGGATCAATCTTCGGCTAAGCCAGCCATCTCCTCTCAAGATAGTGATGAAAATCAAGCCCAGTCTGATTTCTCGGCTTCTGGCATATCATCCTGGGCTAGAAGTTTAAAATTTCCTCAGCAACTGGGAGCAGCAGAGAAGGACTCGAAGATCGAAAATGGAAAGGTGTCAGGACTTGCTCGTTTCACTAATGCTATTGGATTGAAAATGCCTTCAGTAGTTCCAATTCAAGATGATGGTGTAGCAAGCACCACTGCACCAGCACAGTCTGGTGTGCTTGAATCATTCACAACTAGTTTAGTTGACTCGTCTCGCAGTGCAGTGAAGGCTATATCAGTTAAGGCTCGCCATATTGTCTCACAAAACAAACGACGGTATCAGGAGGGAGGTTTTGATTTAGATATGACCTATATCACTGAGAATATAATTGCTATGGGGTTCCCAGCTGGTGACTTGAGCTCTGGAATTTTTGGATTTCTTGAGGGGTTTTATCGGAATCATATGGAAGAAGTTATCAAGTTTTTTGAGACTCATCACAAGGGAAAATACAAAGTATACAATCTTTGTTCAGAGCGATTGTATGACGCATCATTATTTGAGGGGAAGGTTGCAAGTTTCCCATTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATTCCTGGTTGAAGGACGACATTGAGAATGTTGTTGTCGTTCATTGTAAAGCTGGTATAGCGAGAACAGGCTTAATGATCTGTAGTCTTCTGTTATACCTCAAGTTCTTCCCAACTTCAGAGGAGGCCATTGATTACTACAATAAGAAAAGATGTGTGGACGGGAAGGCTCTGGTTCTGCCAAGTCAGATTAGATATGTTAATTACTTTGACCGCATCTTAACCTATTTCCATGGAGATCTCCAGCCCGGACGGAGGTGCATGCTTAGAGGATTTCGCCTTCACAAGTGCCCTTCTTGGATAAGGCCTTCCATTACAATATCAAATCATAATGGAATTCTATTCTCGACAAGAAAGCATCCAAAAACAAAGAATCTAATGCCGGAAGATTTCTGGATCCGTGCAGCAAAGAAAGGATTTGTGGTTTTTGCCCTTCCAGGACAGCCTGGTCTGACAGAACTGGTAGGGGACTTTAAGATCCATTTCCATGACCGCCATGGAGATTTCTACTGCTGGTTGAATACAACCATGATACAAAACAGAATGATCTTGAGTGGCTCTGAGCTTGATGGTTTCGATAAGAGGAATCTCCCTTCACCTGGATTCCAAGTTGAAATTGTGATGATTGATTATGACGGCACTGTGCCAGCAAAATCAAAGGCAGACTCCTCCAATAATCCATCTCCTAGTAGAAATTCTGTTCAAGGCCCTGTTACCAATACTGGAACCGGAAATCAGTCTGGTCAAGCTCAACTCTCCAAGAATGAAGAAGACAATGATGATGTATTCTCAGATAGTGATGGAGAAGAGACTGGAGCAAAAAAGAATCAACCGGGAAAACCTTCTTCTTCTACTTCTGCATCTTATAAAGATCATGTATTGAAATCCAGGGGAGAAATTGAGGATTTAGCAAAGGGAACTAATCAGTTGTCTATCAAGACAGAGGGAAGCAATGAAGCAAATAATGCTTCTAAAGAACATAATACCTCATCGGGTTTAGATGCTCCTAAAACAGGATTGGCTGGGGCGAATTACATTAAAGCAATAGCTGCCGATGCTTCCGTGTTTTCTTTTGGGGATGAAGAAGATTCTGACAGTGAGTGA 1995 41.9 MQQIPFALDSFLQSASSHRSPLLIYFKFSKLSKSPEHEIRLLFSSQVALFTLYMNSDTPDSSSHPPAKDYSMDQSSAKPAISSQDSDENQAQSDFSASGISSWARSLKFPQQLGAAEKDSKIENGKVSGLARFTNAIGLKMPSVVPIQDDGVASTTAPAQSGVLESFTTSLVDSSRSAVKAISVKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGIFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIHLIKSFCQSAYSWLKDDIENVVVVHCKAGIARTGLMICSLLLYLKFFPTSEEAIDYYNKKRCVDGKALVLPSQIRYVNYFDRILTYFHGDLQPGRRCMLRGFRLHKCPSWIRPSITISNHNGILFSTRKHPKTKNLMPEDFWIRAAKKGFVVFALPGQPGLTELVGDFKIHFHDRHGDFYCWLNTTMIQNRMILSGSELDGFDKRNLPSPGFQVEIVMIDYDGTVPAKSKADSSNNPSPSRNSVQGPVTNTGTGNQSGQAQLSKNEEDNDDVFSDSDGEETGAKKNQPGKPSSSTSASYKDHVLKSRGEIEDLAKGTNQLSIKTEGSNEANNASKEHNTSSGLDAPKTGLAGANYIKAIAADASVFSFGDEEDSDSE 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 749391 753122 + Conep08aG0014500.1 Cone8ag0143 442692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0143 664 ProSiteProfiles Phosphatase tensin-type domain profile. 195 374 IPR029023 -
Cone8ag0143 664 ProSiteProfiles C2 tensin-type domain profile. 381 508 IPR014020 -
Cone8ag0143 664 MobiDBLite consensus disorder prediction 514 636 - -
Cone8ag0143 664 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 309 348 IPR000387 GO:0016311(InterPro)
Cone8ag0143 664 MobiDBLite consensus disorder prediction 573 588 - -
Cone8ag0143 664 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 275 329 - -
Cone8ag0143 664 Pfam PTEN2, C2 domain 381 509 - -
Cone8ag0143 664 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 208 375 IPR029021 -
Cone8ag0143 664 CDD PTP_PTEN 205 370 IPR045101 GO:0016791(InterPro)
Cone8ag0143 664 Gene3D Protein tyrosine phosphatase superfamily 181 377 IPR029021 -
Cone8ag0143 664 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 183 598 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cone8ag0143 664 SMART PTEN_C2_2 379 507 IPR014020 -
Cone8ag0143 664 MobiDBLite consensus disorder prediction 58 95 - -
Cone8ag0143 664 MobiDBLite consensus disorder prediction 515 550 - -
Cone8ag0143 664 ProSitePatterns Tyrosine specific protein phosphatases active site. 311 321 IPR016130 GO:0016311(InterPro)
Cone8ag0143 664 MobiDBLite consensus disorder prediction 604 632 - -
Cone8ag0143 664 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 180 377 - -
Cone8ag0143 664 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 451 505 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0143 K01110 - - vvi:100259289 777.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1013 Cone-Chr10:7023423 Cone8ag0143 Cone-Chr8:749391 3.95E-232 dispersed
Cone3ag0992 Cone-Chr3:28728692 Cone8ag0143 Cone-Chr8:749391 5.44E-240 dispersed
Cone4ag0515 Cone-Chr4:2301581 Cone8ag0143 Cone-Chr8:749391 7.01E-30 dispersed
Cone7ag0488 Cone-Chr7:2253238 Cone8ag0143 Cone-Chr8:749391 3.42E-19 dispersed
Cone12ag0143 Cone-Chr12:739465 Cone8ag0143 Cone-Chr8:749391 5.76E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone20ag0690 . 24 264 Protein tyrosine phosphatase (PTP) family AT1G71860 63.9 2.6e-87 319.7
Cone13ag0255 . 22 932 Protein tyrosine phosphatase (PTP) family AT5G23720 63.5 0.0e+00 1077.0
Cone14ag0823 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 59.3 4.5e-45 178.3
Cone12ag1514 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 79.3 2.5e-73 272.3
Cone8ag1559 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 7.9e-72 267.3
Cone5ag0384 . 90 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.7 1.3e-116 416.8
Cone1ag1393 . 90 371 Protein tyrosine phosphatase (PTP) family AT3G52180 67.0 1.2e-109 393.7
Cone5ag0149 . 21 288 Protein tyrosine phosphatase (PTP) family AT3G10940 70.6 5.6e-112 401.4
Cone1ag1626 . 1 172 Protein tyrosine phosphatase (PTP) family AT3G10940 57.8 4.1e-54 209.1
Cone18ag1361 . 140 587 Protein tyrosine phosphatase (PTP) family AT3G01510 70.8 2.0e-196 682.6
Cone11ag0116 . 136 534 Protein tyrosine phosphatase (PTP) family AT3G01510 61.7 6.3e-158 554.7
Cone12ag1505 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 55.0 7.4e-71 264.6
Cone5ag1838 . 22 186 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 5.0e-67 251.9
Cone10ag1396 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.2 4.2e-66 248.8
Cone8ag1552 . 3 194 Protein tyrosine phosphatase (PTP) family AT2G32960 55.5 1.0e-64 244.2
Cone5ag0937 . 4 161 Protein tyrosine phosphatase (PTP) family AT2G32960 52.1 8.2e-54 208.0
Cone12ag0399 . 1 334 Protein tyrosine phosphatase (PTP) family AT2G35680 57.0 1.7e-99 360.1
Cone8ag0418 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 3.2e-98 355.9
Cone4ag0974 . 12 267 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 1.8e-77 287.0
Cone7ag1160 . 25 267 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 4.1e-77 285.8
Cone4ag0974 . 30 219 Protein tyrosine phosphatase (PTP) family AT5G56610 51.5 1.6e-46 183.3
Cone8ag0418 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 51.4 1.4e-42 170.2
Cone12ag0399 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 4.0e-42 168.7
Cone5ag1838 . 15 187 Protein tyrosine phosphatase (PTP) family AT4G03960 71.1 3.8e-75 278.5
Cone12ag1505 . 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 74.7 5.0e-75 278.1
Cone10ag1396 . 23 206 Protein tyrosine phosphatase (PTP) family AT4G03960 69.5 3.6e-73 271.9
Cone8ag1552 . 16 194 Protein tyrosine phosphatase (PTP) family AT4G03960 70.9 1.3e-70 263.5
Cone5ag0937 . 15 165 Protein tyrosine phosphatase (PTP) family AT4G03960 63.6 4.0e-56 215.3
Cone1ag1691 . 16 130 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 3.4e-39 159.1
Cone5ag0937 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 2.4e-80 295.8
Cone1ag1691 . 16 158 Protein tyrosine phosphatase (PTP) family AT3G02800 72.7 4.2e-61 231.9
Cone5ag1838 . 24 182 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.7e-59 224.6
Cone12ag1505 . 45 204 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 5.7e-58 221.5
Cone10ag1396 . 36 203 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 1.3e-57 220.3
Cone8ag1552 . 45 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.8 1.4e-56 216.9
Cone1ag1316 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 70.2 5.2e-67 253.4
Cone5ag0297 . 31 219 Protein tyrosine phosphatase (PTP) family AT3G55270 69.1 5.2e-67 253.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone3ag0992 . 1 618 Protein tyrosine phosphatase (PTP) family AT3G19420 66.2 8.9e-232 800.4
Cone10ag1013 . 1 515 Protein tyrosine phosphatase (PTP) family AT3G19420 72.4 8.1e-217 750.7
Cone8ag0143 . 83 664 Protein tyrosine phosphatase (PTP) family AT3G19420 60.7 9.0e-200 694.1
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone11ag1360 . 68 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.5 1.5e-71 266.9
Cone18ag0218 . 43 248 Protein tyrosine phosphatase (PTP) family AT3G44620 59.4 1.5e-71 266.9
Cone13ag1383 . 1 677 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 9.6e-288 986.5
Cone19ag1373 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.4e-285 978.0
Cone19ag1373 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-261 899.0
Cone13ag1383 . 5 677 Protein tyrosine phosphatase (PTP) family AT5G01290 64.6 1.9e-259 892.5
Cone13ag1383 . 79 688 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-188 657.1
Cone19ag1373 . 75 684 Protein tyrosine phosphatase (PTP) family AT5G28210 56.5 4.4e-186 648.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83