Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0143 | ATGCAGCAGATACCGTTCGCTCTCGATTCATTTCTCCAATCCGCTTCTTCACATAGATCGCCATTGTTGATCTACTTCAAATTTTCGAAGCTTTCAAAATCACCGGAGCACGAAATCCGCTTACTGTTTTCTTCACAGGTCGCGCTTTTCACATTGTACATGAATTCTGATACTCCTGACTCATCATCTCACCCCCCTGCCAAAGATTATAGTATGGATCAATCTTCGGCTAAGCCAGCCATCTCCTCTCAAGATAGTGATGAAAATCAAGCCCAGTCTGATTTCTCGGCTTCTGGCATATCATCCTGGGCTAGAAGTTTAAAATTTCCTCAGCAACTGGGAGCAGCAGAGAAGGACTCGAAGATCGAAAATGGAAAGGTGTCAGGACTTGCTCGTTTCACTAATGCTATTGGATTGAAAATGCCTTCAGTAGTTCCAATTCAAGATGATGGTGTAGCAAGCACCACTGCACCAGCACAGTCTGGTGTGCTTGAATCATTCACAACTAGTTTAGTTGACTCGTCTCGCAGTGCAGTGAAGGCTATATCAGTTAAGGCTCGCCATATTGTCTCACAAAACAAACGACGGTATCAGGAGGGAGGTTTTGATTTAGATATGACCTATATCACTGAGAATATAATTGCTATGGGGTTCCCAGCTGGTGACTTGAGCTCTGGAATTTTTGGATTTCTTGAGGGGTTTTATCGGAATCATATGGAAGAAGTTATCAAGTTTTTTGAGACTCATCACAAGGGAAAATACAAAGTATACAATCTTTGTTCAGAGCGATTGTATGACGCATCATTATTTGAGGGGAAGGTTGCAAGTTTCCCATTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATTCCTGGTTGAAGGACGACATTGAGAATGTTGTTGTCGTTCATTGTAAAGCTGGTATAGCGAGAACAGGCTTAATGATCTGTAGTCTTCTGTTATACCTCAAGTTCTTCCCAACTTCAGAGGAGGCCATTGATTACTACAATAAGAAAAGATGTGTGGACGGGAAGGCTCTGGTTCTGCCAAGTCAGATTAGATATGTTAATTACTTTGACCGCATCTTAACCTATTTCCATGGAGATCTCCAGCCCGGACGGAGGTGCATGCTTAGAGGATTTCGCCTTCACAAGTGCCCTTCTTGGATAAGGCCTTCCATTACAATATCAAATCATAATGGAATTCTATTCTCGACAAGAAAGCATCCAAAAACAAAGAATCTAATGCCGGAAGATTTCTGGATCCGTGCAGCAAAGAAAGGATTTGTGGTTTTTGCCCTTCCAGGACAGCCTGGTCTGACAGAACTGGTAGGGGACTTTAAGATCCATTTCCATGACCGCCATGGAGATTTCTACTGCTGGTTGAATACAACCATGATACAAAACAGAATGATCTTGAGTGGCTCTGAGCTTGATGGTTTCGATAAGAGGAATCTCCCTTCACCTGGATTCCAAGTTGAAATTGTGATGATTGATTATGACGGCACTGTGCCAGCAAAATCAAAGGCAGACTCCTCCAATAATCCATCTCCTAGTAGAAATTCTGTTCAAGGCCCTGTTACCAATACTGGAACCGGAAATCAGTCTGGTCAAGCTCAACTCTCCAAGAATGAAGAAGACAATGATGATGTATTCTCAGATAGTGATGGAGAAGAGACTGGAGCAAAAAAGAATCAACCGGGAAAACCTTCTTCTTCTACTTCTGCATCTTATAAAGATCATGTATTGAAATCCAGGGGAGAAATTGAGGATTTAGCAAAGGGAACTAATCAGTTGTCTATCAAGACAGAGGGAAGCAATGAAGCAAATAATGCTTCTAAAGAACATAATACCTCATCGGGTTTAGATGCTCCTAAAACAGGATTGGCTGGGGCGAATTACATTAAAGCAATAGCTGCCGATGCTTCCGTGTTTTCTTTTGGGGATGAAGAAGATTCTGACAGTGAGTGA | 1995 | 41.9 | MQQIPFALDSFLQSASSHRSPLLIYFKFSKLSKSPEHEIRLLFSSQVALFTLYMNSDTPDSSSHPPAKDYSMDQSSAKPAISSQDSDENQAQSDFSASGISSWARSLKFPQQLGAAEKDSKIENGKVSGLARFTNAIGLKMPSVVPIQDDGVASTTAPAQSGVLESFTTSLVDSSRSAVKAISVKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDLSSGIFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIHLIKSFCQSAYSWLKDDIENVVVVHCKAGIARTGLMICSLLLYLKFFPTSEEAIDYYNKKRCVDGKALVLPSQIRYVNYFDRILTYFHGDLQPGRRCMLRGFRLHKCPSWIRPSITISNHNGILFSTRKHPKTKNLMPEDFWIRAAKKGFVVFALPGQPGLTELVGDFKIHFHDRHGDFYCWLNTTMIQNRMILSGSELDGFDKRNLPSPGFQVEIVMIDYDGTVPAKSKADSSNNPSPSRNSVQGPVTNTGTGNQSGQAQLSKNEEDNDDVFSDSDGEETGAKKNQPGKPSSSTSASYKDHVLKSRGEIEDLAKGTNQLSIKTEGSNEANNASKEHNTSSGLDAPKTGLAGANYIKAIAADASVFSFGDEEDSDSE | 664 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 749391 | 753122 | + | Conep08aG0014500.1 | Cone8ag0143 | 442692 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0143 | 664 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 195 | 374 | IPR029023 | - | |
| Cone8ag0143 | 664 | ProSiteProfiles | C2 tensin-type domain profile. | 381 | 508 | IPR014020 | - | |
| Cone8ag0143 | 664 | MobiDBLite | consensus disorder prediction | 514 | 636 | - | - | |
| Cone8ag0143 | 664 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 309 | 348 | IPR000387 | GO:0016311(InterPro) | |
| Cone8ag0143 | 664 | MobiDBLite | consensus disorder prediction | 573 | 588 | - | - | |
| Cone8ag0143 | 664 | Pfam | Polymorphic toxin system, DSP-PTPase phosphatase | 275 | 329 | - | - | |
| Cone8ag0143 | 664 | Pfam | PTEN2, C2 domain | 381 | 509 | - | - | |
| Cone8ag0143 | 664 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 208 | 375 | IPR029021 | - | |
| Cone8ag0143 | 664 | CDD | PTP_PTEN | 205 | 370 | IPR045101 | GO:0016791(InterPro) | |
| Cone8ag0143 | 664 | Gene3D | Protein tyrosine phosphatase superfamily | 181 | 377 | IPR029021 | - | |
| Cone8ag0143 | 664 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 183 | 598 | IPR051281 | GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER) | |
| Cone8ag0143 | 664 | SMART | PTEN_C2_2 | 379 | 507 | IPR014020 | - | |
| Cone8ag0143 | 664 | MobiDBLite | consensus disorder prediction | 58 | 95 | - | - | |
| Cone8ag0143 | 664 | MobiDBLite | consensus disorder prediction | 515 | 550 | - | - | |
| Cone8ag0143 | 664 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 311 | 321 | IPR016130 | GO:0016311(InterPro) | |
| Cone8ag0143 | 664 | MobiDBLite | consensus disorder prediction | 604 | 632 | - | - | |
| Cone8ag0143 | 664 | FunFam | Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 | 180 | 377 | - | - | |
| Cone8ag0143 | 664 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 451 | 505 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag1013 | Cone-Chr10:7023423 | Cone8ag0143 | Cone-Chr8:749391 | 3.95E-232 | dispersed | |
| Cone3ag0992 | Cone-Chr3:28728692 | Cone8ag0143 | Cone-Chr8:749391 | 5.44E-240 | dispersed | |
| Cone4ag0515 | Cone-Chr4:2301581 | Cone8ag0143 | Cone-Chr8:749391 | 7.01E-30 | dispersed | |
| Cone7ag0488 | Cone-Chr7:2253238 | Cone8ag0143 | Cone-Chr8:749391 | 3.42E-19 | dispersed | |
| Cone12ag0143 | Cone-Chr12:739465 | Cone8ag0143 | Cone-Chr8:749391 | 5.76E-154 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0143 | K01110 | - | vvi:100259289 | 777.704 |