Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0145 ATGAGTTTCCAAACGGTTAGAGCCCTACTCCTTCTATATCTTACAGCTCAATCTCTTGCTCTAAACAGCGATGGTGTTTTTCTACTCTCTTTCAAGTACTCTGTTCTTAAAGATCCACTCTGTGTTTTACAGAGCTGGAACTACGACGACGAAACTCCATGTTCATGGCAAGGAATCACTTGTTCTTCCTCTTTTTCCAGGGTTATGTCTCTCTCTTTACCTAACTCTCAGCTTCTTGGTTCGCTCCCTTCCGATCTGGGTCTGATAGAAAACCTTCAAATTCTCGACCTTTCAAACAACTCCATTAATGGGTCTCTGCCCCAAGCTCTGTTTTCTGGTGGGAATTTTCAGAATCTTCAAGCTCTTAACCTCTCTTATAATAATTTGGCGGGAAATTTACCTAATGGGATTACAGGTTTGATCAATCTCTCCGTCATTGATTTGAAGAGTAATTATTTATCTGGTAATCTTCCCGGTGGGTATAGAGCTGTACACGTTTTAGATTTATCGTCGAATTTGTTTGATGGATCGTTGCCAATTGATTTTGGGGGTGATAGTTTACGTTACATGAACATTTCCCACAATGAATTTTCCGGGAATATCCCAACTGAATTTCCAGGGAAAATTCCAATCAATGCCACTCTCGACTTTTCATTCAACAATTTCACTGGACAGATACCTCAATCCCAAGTTTTTATGAACCAGAAAACAATGCCGTTTAATGGTAACCCTGGCCTATGCGGCAAACCGACAATAAAACCGTGTCCGGTTCCGTCTTCCCCTACATCTCCTCCTGCAATAGCCAGCATCCCAAAAACATCAAACCCGGACACAGGACCTGAACCCCACCCAACAAAACACCTGCAAACCCGGTTCAAACCTGGTACAGTTATAGGCATCGTAATTGGAGACATTGCAGGAATAGGAATTCTTATAGGTCTAATTTACTTATTCATGTATAAATCAAAGAAGAAGAGAAACATGTCAAACGACAATTCATCGTCGTCTTCTTCGGAATCCCATGTTTTTACAAGGTGGGTTTGTTTACCCAAAAGACCAGACATTCAAGAAGAGGAAGAACAAGAAGGAAATGTAGGCATAAGCGGGTCGAAAAGGGAAGAAGGGAAACTGGTAAATTTTGATGGAGAAAAAGAACTTGAGGCAGAGACGTTATTGACAGCTTCGGCTTACATTCTCGGAGCGAGCGGTTCGAGCATAGTTTACAAGGCAGTGCTCGAAACTGGGATCACGGTTGCGGTTCGAAGGGTTAATTACATCACAAGTGGTGTCCGGGAAATGGAAAGGAGGTTCGCGGAGGAATTTGAGACCCGGGTTCGAACTGTGGCAAAGTTGGTGCACCCTAATCTGGTTCGAGTCCGCGGGTTGTACTGTGGAATTGAAGAGAAGCTTATTATCTATGAGTTTGTTCCCAATGGCAGCTTGGCCAATGCTCGTTACAACAGGAAGGTGGGCCCATCACAATGTCAACATCTTACATGGGAGATCCGATCAAAGATAGCGAGAGGGGTAGCTCGTGGATTAGCTTACCTTCACGAAAAGAAGCAAGTTCATGGAAACTTGAAACCGAGCAATATCCTATTGAGCCACAATTTCGAGCCCAAAATCTCAAATTTTGGGCGCGAGAAGTTTTTATTAGGGGAAGGAGGCTCGGCCCAAAATTTTGGAAGTAAGAGATTTACCGCATCCCGTGATGGCATCCACGACTTTGTCCTAGGACCAAGCCCAAGTTCAATCGGTGCTGCTTTATCATCGCCTTATCGTGCACCAGAATCACTTAGAAGCTTCAAGCCCAGCCCAAAATGGGATGTATACTCATTCGGTGTCATATTGCTGGAGCTACTAACCTGGAAGGCTAATGTTGCAGTTTTGGATGAATTGGGCCAGGGTCTTCTTGGGCTTGCTCGTGAAGATAAGAATCGAGCTGTGAGAATGGCTGACGTGGCGATCCGAGCTGGCGTAGAGGGAAAAGAGGATGTGTTAGTATCCTTGTTCGAGTTAGGATGTAGCTGTGTGGGCCCGGTTCCACAAAAAAGACCAACCATGAAAGAAGTATTGCAAGTCTTGGAAAAATACTCATCTTCATCCTCGTCATCTTCATACTATTATAGCCATTAA 2136 43.91 MSFQTVRALLLLYLTAQSLALNSDGVFLLSFKYSVLKDPLCVLQSWNYDDETPCSWQGITCSSSFSRVMSLSLPNSQLLGSLPSDLGLIENLQILDLSNNSINGSLPQALFSGGNFQNLQALNLSYNNLAGNLPNGITGLINLSVIDLKSNYLSGNLPGGYRAVHVLDLSSNLFDGSLPIDFGGDSLRYMNISHNEFSGNIPTEFPGKIPINATLDFSFNNFTGQIPQSQVFMNQKTMPFNGNPGLCGKPTIKPCPVPSSPTSPPAIASIPKTSNPDTGPEPHPTKHLQTRFKPGTVIGIVIGDIAGIGILIGLIYLFMYKSKKKRNMSNDNSSSSSSESHVFTRWVCLPKRPDIQEEEEQEGNVGISGSKREEGKLVNFDGEKELEAETLLTASAYILGASGSSIVYKAVLETGITVAVRRVNYITSGVREMERRFAEEFETRVRTVAKLVHPNLVRVRGLYCGIEEKLIIYEFVPNGSLANARYNRKVGPSQCQHLTWEIRSKIARGVARGLAYLHEKKQVHGNLKPSNILLSHNFEPKISNFGREKFLLGEGGSAQNFGSKRFTASRDGIHDFVLGPSPSSIGAALSSPYRAPESLRSFKPSPKWDVYSFGVILLELLTWKANVAVLDELGQGLLGLAREDKNRAVRMADVAIRAGVEGKEDVLVSLFELGCSCVGPVPQKRPTMKEVLQVLEKYSSSSSSSSYYYSH 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 757781 760534 - Conep08aG0014700.1 Cone8ag0145 442694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0145 711 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cone8ag0145 711 Pfam Leucine Rich Repeat 91 110 IPR001611 GO:0005515(InterPro)
Cone8ag0145 711 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515(InterPro)
Cone8ag0145 711 Pfam Protein kinase domain 398 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0145 711 SUPERFAMILY L domain-like 23 251 - -
Cone8ag0145 711 MobiDBLite consensus disorder prediction 251 289 - -
Cone8ag0145 711 Pfam Protein tyrosine and serine/threonine kinase 588 694 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0145 711 FunFam Nuclear pore complex protein NUP107 21 163 - -
Cone8ag0145 711 Pfam Leucine rich repeat N-terminal domain 21 62 IPR013210 -
Cone8ag0145 711 Gene3D Transferase(Phosphotransferase) domain 1 476 709 - -
Cone8ag0145 711 Gene3D Phosphorylase Kinase; domain 1 358 475 - -
Cone8ag0145 711 Gene3D Ribonuclease Inhibitor 20 162 IPR032675 -
Cone8ag0145 711 PANTHER OS05G0588300 PROTEIN 167 701 IPR050994 -
Cone8ag0145 711 SUPERFAMILY Protein kinase-like (PK-like) 398 696 IPR011009 -
Cone8ag0145 711 MobiDBLite consensus disorder prediction 266 280 - -
Cone8ag0145 711 ProSiteProfiles Protein kinase domain profile. 393 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0145 711 FunFam Leucine-rich repeat receptor-like protein kinase 164 257 - -
Cone8ag0145 711 Gene3D Ribonuclease Inhibitor 163 257 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0145 Cone-Chr8:757781 Cone13ag0812 Cone-Chr13:7457178 5.66E-47 dispersed
Cone6ag1421 Cone-Chr6:11390191 Cone8ag0145 Cone-Chr8:757781 1.32E-210 wgd
Cone8ag0145 Cone-Chr8:757781 Cone8ag1108 Cone-Chr8:9866904 2.82E-155 wgd
Cone8ag0145 Cone-Chr8:757781 Cone9ag1347 Cone-Chr9:10099847 3.98E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83093 PF00085 Thioredoxin 5.10E-20 CL0172 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0145 - - - 0.0