Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0150 ATGGAGCTATCATTGTTAAAAGCGCTTCTCGGACACATCTCCTTGTATTTTCGTTTGTCGTCTGGTGACAGCATAAACTCAGAGGTTGTATTGAAGTACCACCAAAAAGGAGAAGAGATACTGAAGCTGTTGAAGCCAGTACTTGATGCAATTGTCGATTCAGAAATAGCTTATCAGGAAAAGCTTGATAAGGCATTTGAAGATCTGAGTCATTCAGTTGATAAATTAAGAGATCTCTTCGAAAACTGGAAACCACTGTCAAGTAAAGTATATTTTGTTCTGCAAAGTGAAGCACTGATATCAAAGATTCAGAAATCTACCTTGGATACCTTTCAGATCCTGCAGTCATTGCATGAATATCTCCCCGTTAAATTAAGCTCAACATCTGTTGAGCTCTGCATTCAGAAAATCAAGCATATGGGAAATGAACAAACCTTTATTATCATAAAAGATGCACTAAGAAATCAAGTAGAAGGTGTGGAGCCTAGCGCTGAAGCTCTGTTGAAAATCGCTGAGCCCTTGAACTTGAGGTCAAATGAGGGGATTCTGATCGAGGCTGTGGCCCTTGAGAAGCTGAAAGAAAAAGCCGAACAAGCTGAAAATGCTGGAGAAGTGGAGTATATTGATCAAATTATTTCCATAGTAACACTCTTGCATGAGCATCTTATAGTAATAGATCAGTCCCAAATCACAAGCTCTGTTCTAATCCCAGCTGATTTCTGTTGTCCTCTCTCGCTCAAGCTTATGACAGACCCAGTGATAGTATCATCTGGACAAACTTATGAGAGGGCTTTTATCAAGAGATGGATTGATCTTGGTCTCAATGTTTGTCCAAAGACAAGACAGACATTGTCTCACACTAATTTGATTCCTAATTACACGGTCAAGGCACTAATTGCAAACTGGTGCGAGTTAAATAATGTAAAGCTCCCTGACCCAACAAAGCCTATCATCATAAACAATGTGAGCTTAGAATCAAAAAATCAGTCTATGGGTTCTCCTGGAAACAAAGTAAATTCATCTAGTGGAAGTACAACACATCAAGAGGGCCCTTCTCCATCGGACGACTCCTTGACTACTATTACTGCTAACGGATCAGGTTCAGATATCACAACAGTGTCACAAAAAAATTCCGGAGAAATATTACCTGGGTCTGAAGATAAAAGTGGACATTCTGCACCATCGCGAACAAATCTTCAGGAAATAAGTGGGGTTCAACTTGACCTGCCTCAGAATCATAACAAAACTTCCTCTGCCTCTAGTGTAGTTTCTGATTCGGGTGGTTTTCCTCGAGGAAATTTAGGAGACAACAATGAGGCTTACAGCAGTGATAACTCAGGGGAGGTGAGATCAGAGTCGCCTCTTAACACTACTCCCTTAACGGCCCCACAAAGAGAGCCAGAATATTCACCTAGGTTAATGGAGGCAAGAACTCGGACTCATTCTATCTGGCGTAGACCATCAGAGAGGTATGTCCCAAAAATCGTTTCTTCCTCTGCTAGTGAAACAAGGCCTGATCTTTCTGGCATTGAAACCCAAGTCAAGGGCCTTGTGGAGGACTTAAAGAGCGATTCAGATGAGACCTTACTGGCTGCGACAGCAGAGATCCGGTTGCTCGCCAAACACAGTATGGATAATCGGATTGTGATTGCAAATTGTGCGGCCATCAACTTTCTGGTCGATTTACTCCGCTCAAACATTTCCAAAATTCAAGAAAATGCTGTCACTGCCCTTTTAAACTTATCAATCAACGATAATAACAAAACCGCCATTGCTCAAGCCAATGCGATAGAACCATTGATTCATGTTCTTGAAACTGGAAGCCCTGAAGCAAAAGAGAACTCTGCCGCCACTCTCTTTAGCCTTTCCGTGATTGAGGATAACAAGGCCAAGATTGGACGGTCTGGAGCGATCGGCCCTTTAGTTGATCTATTGGGAAACGGTACTCCAAGAGGTAAAAAAGATGCAGCCACTGCCTTGTTTAATTTATCGATTTTTCATGAAAATAAGAGTAGGATTGTAGAGGCGGGAGCTGTTAAGTATCTTGTGGAGTTGATGGACCCAGCGGCTGGTATAGTTGATAAGGTGGTTGCTGCTTTGGCTAATCTGTCTACAGTTCCGGAGGGAAGGACTGCTATTGGTGAGGAAGGTGGGATTCCAGTTTTGGTTGAGGTTGTTGAGTTGGGTTCGTCTCGAAGTAAGGAGAATGCAGCTGCTGCTTTGTTGCAGCTTTGTACAACGAGTAATAGGTTTTGCAATATGGTACTTCAAGAAGGGGCGGTCCCTCCTTTAGTGGCATTATCACAATCTGGCACCCCAAGGGCCAAAGAAAAGGCACAGGCACTTCTAAGCTTCTTCAGAAACCATAGACAACAAGGTAATGCAGGAAGAGGCTGA 2397 42.72 MELSLLKALLGHISLYFRLSSGDSINSEVVLKYHQKGEEILKLLKPVLDAIVDSEIAYQEKLDKAFEDLSHSVDKLRDLFENWKPLSSKVYFVLQSEALISKIQKSTLDTFQILQSLHEYLPVKLSSTSVELCIQKIKHMGNEQTFIIIKDALRNQVEGVEPSAEALLKIAEPLNLRSNEGILIEAVALEKLKEKAEQAENAGEVEYIDQIISIVTLLHEHLIVIDQSQITSSVLIPADFCCPLSLKLMTDPVIVSSGQTYERAFIKRWIDLGLNVCPKTRQTLSHTNLIPNYTVKALIANWCELNNVKLPDPTKPIIINNVSLESKNQSMGSPGNKVNSSSGSTTHQEGPSPSDDSLTTITANGSGSDITTVSQKNSGEILPGSEDKSGHSAPSRTNLQEISGVQLDLPQNHNKTSSASSVVSDSGGFPRGNLGDNNEAYSSDNSGEVRSESPLNTTPLTAPQREPEYSPRLMEARTRTHSIWRRPSERYVPKIVSSSASETRPDLSGIETQVKGLVEDLKSDSDETLLAATAEIRLLAKHSMDNRIVIANCAAINFLVDLLRSNISKIQENAVTALLNLSINDNNKTAIAQANAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKAKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKSRIVEAGAVKYLVELMDPAAGIVDKVVAALANLSTVPEGRTAIGEEGGIPVLVEVVELGSSRSKENAAAALLQLCTTSNRFCNMVLQEGAVPPLVALSQSGTPRAKEKAQALLSFFRNHRQQGNAGRG 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 776871 781770 + Conep08aG0015200.1 Cone8ag0150 442699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0150 798 SMART arm_5 543 583 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 SMART arm_5 625 665 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 SMART arm_5 584 624 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 SMART arm_5 706 746 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 SMART arm_5 666 705 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 MobiDBLite consensus disorder prediction 436 464 - -
Cone8ag0150 798 FunFam RING-type E3 ubiquitin transferase 497 792 - -
Cone8ag0150 798 MobiDBLite consensus disorder prediction 326 382 - -
Cone8ag0150 798 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Cone8ag0150 798 MobiDBLite consensus disorder prediction 410 427 - -
Cone8ag0150 798 SUPERFAMILY ARM repeat 514 786 IPR016024 -
Cone8ag0150 798 SUPERFAMILY RING/U-box 236 313 - -
Cone8ag0150 798 CDD RING-Ubox_PUB 237 289 IPR045210 -
Cone8ag0150 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 309 IPR013083 -
Cone8ag0150 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 596 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 Coils Coil 182 202 - -
Cone8ag0150 798 MobiDBLite consensus disorder prediction 410 467 - -
Cone8ag0150 798 MobiDBLite consensus disorder prediction 326 396 - -
Cone8ag0150 798 PANTHER U BOX DOMAIN-CONTAINING 32 789 - -
Cone8ag0150 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 718 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0150 798 Pfam Armadillo/beta-catenin-like repeat 584 623 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 Pfam Armadillo/beta-catenin-like repeat 545 582 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 Pfam Armadillo/beta-catenin-like repeat 627 664 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 636 678 IPR000225 GO:0005515(InterPro)
Cone8ag0150 798 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0150 798 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0150 798 Gene3D - 494 795 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0127 Cone-Chr16:718916 Cone8ag0150 Cone-Chr8:776871 9.54E-10 dispersed
Cone2ag0153 Cone-Chr2:794797 Cone8ag0150 Cone-Chr8:776871 1.77E-09 dispersed
Cone7ag0992 Cone-Chr7:7652318 Cone8ag0150 Cone-Chr8:776871 9.45E-79 dispersed
Cone8ag0150 Cone-Chr8:776871 Cone8ag0814 Cone-Chr8:8171749 2.13E-27 dispersed
Cone12ag0156 Cone-Chr12:793911 Cone8ag0150 Cone-Chr8:776871 0 wgd
Cone6ag1431 Cone-Chr6:11480343 Cone8ag0150 Cone-Chr8:776871 1.06E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0150 - - - 0.0