Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0163 ATGGATACCACTTATACCTTGTTTAGAGACGTAGTATCTACTCTTCAACCTGAGCAATATCATCATCATCATCATCATCTTCGTTCATATAACTCGAGTAGAAGTGCTACTAGTACTACTACTAATTCTTCCAATTCTAAATCCTTCACTCAAAAATATTTTCAAGAAGAAGAAGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACTTTTCATCGTCTTCTTCCAAACACTTGTACTACCCTACTAATTATAATCCCCGCGGCCACCACCCACCTACTTCCGACGCCGTTACTGCTGCCACCTCACCGGATTTAACTAGCACAGATCAATTCCCCTTGGAGCTTATCTCCGGCAAGAACTGGGCCTCGGACCTACTCCTCGAAACCGCCCGATCAATCTCCAGTAAGAACAGCACACGTGTCCAGAAACTCATGTGGATGCTCAACGAGCTAAGCTCACCTTACGGCGACACTGACCAGAAGATCGCCGCTTGTTTCCTCCAAGCACTTTTCAGCCGCATGACTGACTCCGGTCAACGCTGCTACCGAACTTTAACCTCTTCCTCTGAGAAAACGTCGTCCTTCGACTCCACAAGAAAACTGCTTCTCAAGTTCCAAGAAGTAAGCCCTTGGACTACTTTTGGTCACGTAGCATGTAATGGCGCAATACTAGAGGCCTTAGACGGCGAAAACAAGCTCCATATAATCGATGTCAGCAACACTTACTGCACACAATGGCCCACCTTGCTCGAATCGCTTGCCACTCGATCCGACGAGACCCCTCATCTCCGACTAACCACCGTGATCGCCGCGAAAACCGTCGGAGTATCATCCCCGTCGCAAAAGGTGATGAAAGAGATCGGAGCTCGTTTGGAAAGATTTGCTAGGCTTATGGGCGTTCCTTTCATATTCAAAGTGGTTTATCATTCTAGTGATCTTTCCGAATTAAACGTGGACGTATTGGGTATTGAAGAAGACGAAGCGATTGCTGTGAATTGCGTGGGAACGTTGCATTCTATAACGACAGTTAGTAACCGTCGGGAAATGTTGATCTCTTTGTTTCGCGGTTTGGGGCCGCGCGTTTTAACCGTCGTTGAAGAGGAAGCCGAGCTGGATGTTGGGCTTGATGGGCCTGAGTTTGTAAAGGGCTTCTCGGAGTGTTTAAGGTGGTTTCGAGTCTACTTCGAGATGTTAGAGGAGAGTTTTACGAGGACGAGTAACGAGCGGCTCATGCTTGAGCGAGCGGCTGGGCGAGCCGTGGTCGACTTGGTGGCTTGCATGCCGGATGAGTCTGTAGAGCGGAGGCAATTAGCCGCTAGCTGGGTGAGCCGGTTTCATGGGTGTGGGTTCAATACGGTGCCGTTTAGCGATGAGGTTTGTGACGACGTCAGAGCGTTGTTGAGAAGGTATAAGGAGGGCTGGGCGATGACGTCAGAGGGATCTGCAGGCGCCGGAATATTCTTGACATGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCTTGGAGGCCTTGA 1518 49.08 MDTTYTLFRDVVSTLQPEQYHHHHHHLRSYNSSRSATSTTTNSSNSKSFTQKYFQEEEEEECFNFFMDEEDFSSSSSKHLYYPTNYNPRGHHPPTSDAVTAATSPDLTSTDQFPLELISGKNWASDLLLETARSISSKNSTRVQKLMWMLNELSSPYGDTDQKIAACFLQALFSRMTDSGQRCYRTLTSSSEKTSSFDSTRKLLLKFQEVSPWTTFGHVACNGAILEALDGENKLHIIDVSNTYCTQWPTLLESLATRSDETPHLRLTTVIAAKTVGVSSPSQKVMKEIGARLERFARLMGVPFIFKVVYHSSDLSELNVDVLGIEEDEAIAVNCVGTLHSITTVSNRREMLISLFRGLGPRVLTVVEEEAELDVGLDGPEFVKGFSECLRWFRVYFEMLEESFTRTSNERLMLERAAGRAVVDLVACMPDESVERRQLAASWVSRFHGCGFNTVPFSDEVCDDVRALLRRYKEGWAMTSEGSAGAGIFLTWKDQPVVWASAWRP 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 841984 843753 + Conep08aG0016500.1 Cone8ag0163 442712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0163 505 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 73 503 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cone8ag0163 505 ProSiteProfiles GRAS family profile. 115 504 IPR005202 -
Cone8ag0163 505 MobiDBLite consensus disorder prediction 18 51 - -
Cone8ag0163 505 Pfam GRAS domain family 126 504 IPR005202 -
Cone8ag0163 505 MobiDBLite consensus disorder prediction 31 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0859 Cone-Chr18:5906894 Cone8ag0163 Cone-Chr8:841984 1.52E-138 dispersed
Cone8ag0163 Cone-Chr8:841984 Cone7ag0660 Cone-Chr7:3486769 1.79E-32 dispersed
Cone12ag0168 Cone-Chr12:849079 Cone8ag0163 Cone-Chr8:841984 1.47E-284 wgd
Cone6ag1458 Cone-Chr6:11652857 Cone8ag0163 Cone-Chr8:841984 4.12E-200 wgd
Cone8ag0163 Cone-Chr8:841984 Cone9ag1379 Cone-Chr9:10321643 2.88E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46625 PF00069 Pkinase 3.10E-45 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0163 K27743 - rcu:8283369 629.402