Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0167 ATGGGTGTGCCTAAACAAAAGTGGACAGCTGAAGAAGAAGCAGCCCTTAAAGAAGGAGTAATTAAACATGGGGCAGGAAAGTGGCGTGCGATCCTTACAGATTCAGAATTCAGTGCCATTCTGCATCTTCGATCCAATGTAGATCTCAAGGACAAATGGAGAAACATCAATGTGACTGCAATATGGGGTTCTAGGCAGAAGGCTAAGCTAGCGCTTAAACAGAATCTTCCAGCTATTCAAAATCATGAAACTGCCCTAGCTGGAAGCATTGTGGTTCACACTGATGAAGCCATAGTTGATGCTAAGCCTCTTACGGTTTCTAATGGAACATTGAAGACTCCAAGCTCAAAAGAACCAGTTGCAAGGTTAGACAAACTTATATCAGAGGCTATTAAAAAACTAGAGGAGCCAAGGGGATCTGACAGGGCTGCAATTGCTCTGTACATAGAGGAAAACTACTGGGCACCTCCAAACCTAAAAAAGCTACTATCAACAAAATTAAAGCATATGACTGCAAACGGCAAGCTGATAAAGGTGAAGCATAGATACCGAATTGCACCGAGTTCAACTTTTTCTGGGAAACGAAAAGGTTCTTCACTATTACTCCTGGAGGGAAAACAGAGGGATTCTTCGTCAAAAGCTGAGAGAAGTGAAGTCAACATGATTTCCAGATCTCAGGTTGACTCAGAGCTAACAACCATGAGAAGAATGACTGCAGAAGAGGCTGCTGCAGCTGCTGCACAGGCAGTTGCTGAGGCAGAAGCCGCCATCTCAGCAGCAGAGGTAGCAGCCAGAGAGGCTGAGGCAGCAGAAGCTGAAGCTGAAGCAGCAAAAGCTTTTGCTGAAGCAGCTTTGAGGGCATTGGAATGCAGAACCCTTCAAGCTAGAAAACACCATCCAAAAGCCAATTTTTAA 915 44.59 MGVPKQKWTAEEEAALKEGVIKHGAGKWRAILTDSEFSAILHLRSNVDLKDKWRNINVTAIWGSRQKAKLALKQNLPAIQNHETALAGSIVVHTDEAIVDAKPLTVSNGTLKTPSSKEPVARLDKLISEAIKKLEEPRGSDRAAIALYIEENYWAPPNLKKLLSTKLKHMTANGKLIKVKHRYRIAPSSTFSGKRKGSSLLLLEGKQRDSSSKAERSEVNMISRSQVDSELTTMRRMTAEEAAAAAAQAVAEAEAAISAAEVAAREAEAAEAEAEAAKAFAEAALRALECRTLQARKHHPKANF 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 853030 857148 - Conep08aG0016900.1 Cone8ag0167 442716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0167 304 FunFam Telomere repeat-binding factor 1 117 197 - -
Cone8ag0167 304 Coils Coil 236 291 - -
Cone8ag0167 304 SMART h15plus2 110 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone8ag0167 304 CDD SANT_TRF 6 57 - -
Cone8ag0167 304 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691(InterPro)
Cone8ag0167 304 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cone8ag0167 304 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cone8ag0167 304 Gene3D - 106 200 IPR036388 -
Cone8ag0167 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cone8ag0167 304 SMART sant 4 59 IPR001005 -
Cone8ag0167 304 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone8ag0167 304 Gene3D - 8 85 - -
Cone8ag0167 304 FunFam Telomere repeat-binding factor 1 2 58 - -
Cone8ag0167 304 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cone8ag0167 304 SUPERFAMILY Winged helix DNA-binding domain 117 196 IPR036390 -
Cone8ag0167 304 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1042 Cone-Chr12:8696262 Cone8ag0167 Cone-Chr8:853030 3.08E-58 dispersed
Cone3ag1033 Cone-Chr3:29123410 Cone8ag0167 Cone-Chr8:853030 4.42E-79 dispersed
Cone5ag1062 Cone-Chr5:4691840 Cone8ag0167 Cone-Chr8:853030 1.34E-07 dispersed
Cone7ag1115 Cone-Chr7:8399468 Cone8ag0167 Cone-Chr8:853030 1.17E-31 dispersed
Cone12ag0173 Cone-Chr12:863163 Cone8ag0167 Cone-Chr8:853030 1.67E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46626 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0167 K09422 - csv:101202913 343.199