Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0182 ATGGGTTTTGATGATATTTGTAACACAGGCCTTGTTCTAGGCTTAGGCTCGTCCTTTACATGTAGTATAAAGCCAAAGAAAGTTCAGTGCTTATCTTTTGAGCCATCTTTGGCTTTGGGCCTTGGAGTAAATAGTATTATCGATATGAACACAGGTGGTTATAGTAGTGATCACGGGCAGGCCGGCTCGAATCACAGTCACAGCCTAAGCGGTGTCTCTAACTCTTTCTCGAGCGGTGGGGACGCCGGCGGTGACGGTGGTAATAGGGCTGTTAAGAGAGAAAGAGCGCTTAGTAGTGAAGAGATTGAATTGGAAGAGAAAGTAATTTCTTCAAGAGTTGGAATAAGTGATGTTGAAGATGAAGATGGTTCTACAAATGCTAGAAAGAAACTTAGGCTTACTAAAGATCAGTCTGCTCTTTTAGAAGAAAGCTTCAAGCTACATAGCACTCTCAACCCCCAGAGGCAAAAGCAAGCACTAGCGATTCAGCTGAATCTAAGGCTAAGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCCAGGACTAAGTTGAAGCAAACAGAGGTGGATTATGAGCTGTTGAAGAAGTGCTGTGAAAATCTAACGGATGAGAATAGAAGATTAAAAAAAGAGGTTATAGAATTGAAGGCTCTAAAACTTGCTCAACCATCATTCTTGATGCATATGCCTGCAGCTACTCTCACCATGTGCCCTTCCTGTGAAAAGATAGATCACGGGCCGACACCACCGCCGGCCAAGACGACACCTTTTTCTATGGAGCCTCACCATCACTTGTACATTAATCCCTTCACAAACCCTAGTTCTGCTGCCTGTTAA 837 43.37 MGFDDICNTGLVLGLGSSFTCSIKPKKVQCLSFEPSLALGLGVNSIIDMNTGGYSSDHGQAGSNHSHSLSGVSNSFSSGGDAGGDGGNRAVKRERALSSEEIELEEKVISSRVGISDVEDEDGSTNARKKLRLTKDQSALLEESFKLHSTLNPQRQKQALAIQLNLRLRQVEVWFQNRRARTKLKQTEVDYELLKKCCENLTDENRRLKKEVIELKALKLAQPSFLMHMPAATLTMCPSCEKIDHGPTPPPAKTTPFSMEPHHHLYINPFTNPSSAAC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 956996 958595 + Conep08aG0018400.1 Cone8ag0182 442731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0182 278 Pfam Homeodomain 128 183 IPR001356 GO:0003677(InterPro)
Cone8ag0182 278 ProSiteProfiles 'Homeobox' domain profile. 124 185 IPR001356 GO:0003677(InterPro)
Cone8ag0182 278 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone8ag0182 278 SMART HOX_1 126 189 IPR001356 GO:0003677(InterPro)
Cone8ag0182 278 Coils Coil 184 218 - -
Cone8ag0182 278 MobiDBLite consensus disorder prediction 56 81 - -
Cone8ag0182 278 SUPERFAMILY Homeodomain-like 120 186 IPR009057 -
Cone8ag0182 278 CDD homeodomain 128 186 IPR001356 GO:0003677(InterPro)
Cone8ag0182 278 Gene3D - 121 190 - -
Cone8ag0182 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 252 IPR050762 -
Cone8ag0182 278 MobiDBLite consensus disorder prediction 56 89 - -
Cone8ag0182 278 SMART halz 185 228 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone8ag0182 278 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0182 Cone-Chr8:956996 Cone9ag0657 Cone-Chr9:3125555 8.69E-50 dispersed
Cone12ag0188 Cone-Chr12:964039 Cone8ag0182 Cone-Chr8:956996 2.35E-154 wgd
Cone4ag1641 Cone-Chr4:12388560 Cone8ag0182 Cone-Chr8:956996 3.29E-44 wgd
Cone6ag1484 Cone-Chr6:11792840 Cone8ag0182 Cone-Chr8:956996 4.45E-68 wgd
Cone7ag1311 Cone-Chr7:9619411 Cone8ag0182 Cone-Chr8:956996 5.37E-40 wgd
Cone8ag0182 Cone-Chr8:956996 Cone9ag1406 Cone-Chr9:10475756 8.82E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46630 PF07939 DUF1685 2.90E-20 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0182 K09338 - rcu:8267677 266.159