Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0208 ATGGCGTCTAAGAACGGTGCAGAAGAGAAAGTAGCTCATCATCATGTAAAGTTTCCCTTATTGAGAGATTTCGCTTCTAAAGACCACGAACCGCACCGTGAAGATGATGATGATGATCGAGATGATGAGCGGCTGAATCTTTCCAAAAGGGTATGGATTGAATCAAAGAAGCTATGGATCATAGTGGGTCCTACAATATTCAGTAGGGTTGCTTCTTACTCCATGTTAGTCATCACTCAAGCCTTTGCTGGCCACTTGGGAGACCTTGAGCTCGCTGCCATTTCCATTGCCAATAATGTCATTGTTGGCTTCGACTTTGGCCTTATGTTGGGAATGGCAAGCGCGTTAGAAACGCTATGTGGACAAGCGTATGGAGCGAAGAAGTATTACATGTTGGGCGTGTATATGCAACGTTCATGGATTGTTCTATTTCTATGTTGTGTTCTCCTTCTACCACTCTACCTCTTCGCCTCGCCGTTTCTGAAGCTATTAGGGCAACCATCCGAACTAGCCGAACTCTCGGGCCGCGTGTCTGTCTGGATGATCCCACTCCACTTCAGCTTTGCATTCCAGTTCCCTCTACAGAGATTCTTACAAAGTCAGCTGAAAACAGCTGCAATTGCATGGGTAACACTTATAGGACTTATAGTGCATGTGTTTATGAGCTGGTTGTTCGTGTATAAGCTTCAGCTTGGAGTCATTGGCACTGCCAGCATTTTGAACTTTTCTTGGTGGGTTTTGGTATTTGGTCTTCTGGGTTACACCATTTTTGGTGGGTGCCCACTTACTTGGTCTGGTTTCTCCATGGAAGCATTTACTGGTCTCTGGGAATTCACCAAATTATCCACTGCTTCTGGAGTCATGCTATGTTTGGAGAATTGGTACTATAGAATACTTATTCTAATGACTGGAAATTTGAAGAATGCAGAGATCGCAGTCGATGCTTTGTCTATCTGCATGACCATTAATGGATGGGAGATGATGATCCCTCTAGCATTTTTTGCTGGAACCGGAGTGAGAGTGGCAAATGAGCTCGGAGCTGGAAATGGAAAAGGAGCAAAGTTCGCGACGAAAGTAGCAGTGATGACATCAATTGTGATCGGCCTCTTCTTTTGGTTACTGATTATGTTTTTTCACAACGAAATTGCCTTCATTTTTTCTTCAAGCAAACCTGTGTTGGAGGCAGTGAACAAGCTCTCCATCCTCTTGGCCTTCACCATTCTACTTAACAGTGTCCAGCCTGTTCTCTCCGGGGTAGCAATTGGGTCGGGTTGGCAATCTTATGTTGCATACATAAACTTGGGTTGCTATTATCTCATTGGAGTGCCGCTTGGATTCTTGATGGGTTGGGGTTTCAACCAAGGAGTTATGGGAATTTGGGCCGGTATGATATTCGGTGGAACGGCAATTCAAACTGCGATATTGGCTATCATTACTTGTCGATGTGACTGGGAAAAAGAGGCATATAAAGCTAGTGTGGAAGTGAAGCGGTGGGCAGATAGAACATAA 1509 44.6 MASKNGAEEKVAHHHVKFPLLRDFASKDHEPHREDDDDDRDDERLNLSKRVWIESKKLWIIVGPTIFSRVASYSMLVITQAFAGHLGDLELAAISIANNVIVGFDFGLMLGMASALETLCGQAYGAKKYYMLGVYMQRSWIVLFLCCVLLLPLYLFASPFLKLLGQPSELAELSGRVSVWMIPLHFSFAFQFPLQRFLQSQLKTAAIAWVTLIGLIVHVFMSWLFVYKLQLGVIGTASILNFSWWVLVFGLLGYTIFGGCPLTWSGFSMEAFTGLWEFTKLSTASGVMLCLENWYYRILILMTGNLKNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATKVAVMTSIVIGLFFWLLIMFFHNEIAFIFSSSKPVLEAVNKLSILLAFTILLNSVQPVLSGVAIGSGWQSYVAYINLGCYYLIGVPLGFLMGWGFNQGVMGIWAGMIFGGTAIQTAILAIITCRCDWEKEAYKASVEVKRWADRT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1120557 1124969 + Conep08aG0021700.1 Cone8ag0208 442757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0208 502 Pfam MatE 286 447 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone8ag0208 502 Pfam MatE 64 224 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone8ag0208 502 NCBIfam MATE family efflux transporter 64 460 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone8ag0208 502 PANTHER MULTIDRUG RESISTANCE PROTEIN 47 487 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone8ag0208 502 CDD MATE_eukaryotic 54 488 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone8ag0208 502 MobiDBLite consensus disorder prediction 22 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0208 K03327 - - mdm:103446099 808.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0528 Cone-Chr10:2438611 Cone8ag0208 Cone-Chr8:1120557 9.93E-173 dispersed
Cone17ag1199 Cone-Chr17:8759756 Cone8ag0208 Cone-Chr8:1120557 1.70E-222 dispersed
Cone19ag1060 Cone-Chr19:7796520 Cone8ag0208 Cone-Chr8:1120557 3.69E-22 dispersed
Cone20ag0535 Cone-Chr20:2934404 Cone8ag0208 Cone-Chr8:1120557 5.27E-216 dispersed
Cone7ag1795 Cone-Chr7:11763816 Cone8ag0208 Cone-Chr8:1120557 1.97E-157 dispersed
Cone8ag0208 Cone-Chr8:1120557 Cone9ag1079 Cone-Chr9:6173798 1.17E-140 dispersed
Cone4ag1315 Cone-Chr4:10806673 Cone8ag0208 Cone-Chr8:1120557 5.93E-236 wgd
Cone6ag1543 Cone-Chr6:12118169 Cone8ag0208 Cone-Chr8:1120557 1.93E-228 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129