Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0224 ATGTTGTTTAAGATGGGAAAACTGTTTCTTGCTGTTCTATCATTGGCTTCCTTCTATTCTCTTGTGGTGTCTGATTATCAAGGAGATGCACTGTCTACATTCAGGTCTTCACTTAAGGCCACACCAAATCAACTCAGTGATTGGACCCCTAGTCAAGTTAATCCATGCACGTGGTCCAATATTATTTGCACTGCAAATATTGTGACTTCTGTATCATTGACAAGTATGGGATTCACTGGAACCTTGTCTTCAGGAATTAGTGTTCTGAAAAATCTTACAACCCTAAACTTACAAGGAAATTACATTACCGGAGAGATACCAGATGCATTTGGAAATCTGACGAGTTTGCAAAGCTTGGATTTGACAAATAACAGTTTAACAGGTCAAATACCACCTTCCCTTGGCAATCTGAAAAACCTTCAATTCCTGACTCTGAATCAAAATGATCTTAGTGGGACTATACCTGAATCACTTTCAAGTCTTCCAAGCTTGGTCAATCTTTTGCTCGATTCGAATAATCTCACTGGTGAAATTCCAGAGCAGCTATTTCAACTTCCAAAATACAACTTCTCAGGAAATAAGTTGAATTGTGGGATGAATACTCACCCGTGCGCATCTGATAATAAAACCTCAGATTCGGCAAATAAGTCCAAGACAGGGATTATAGCAGGAATTGTTGGAGGGTTCACATTTACTATTCTTTTTGTTGGTTTTTTGTTTTTCCTTTTGAAGAGTAGACACAAAGGCTACAAGCGTGAAGTTTTTGAAGATGTTGCAGGTGAAGATGACCGGAGAATTGAGTTTGGTCAATTGAAAAGATTTGCATGGAGGGAATTACAAATAGCTACGAACAACTTCAGCGAGAAAAATGTTCTAGGACAAGGAGGTTTTGGAAAGGTTTACAAAGGGGTTCTCTCAGATAACACAAATATTGCTGTGAAACGGTTAACTGACTATGAAAGCCCAGGAGGAGATGCTGCTTTCCATCGTGAAGTTGAGATGATAAGTGTAGCTGTTCACAAGAATCTACTACGCTTAATTGGATTTTGCACAACTCCAACAGAGCGCCTCTTGGTTTATCCCTTTATGCAGAACCTGAGTGTTGCCTACCGTCTACGAGAGGTTAAGCCTGGGGAACCTATTTTGGATTGGCCTACAAGAAAACAGGTGGCTCTAGGGACAGCACGTGGTTTAGAGTATCTTCATGAACATTGCAATCCTAAGATTATTCATCGAGATGTCAAGGCAGCTAATGTCTTGCTTGATGAAGATTTTGAAGCAGTTGTAGGTGATTTTGGCCTAGCTAAGCTGGTAGATGTAAGGAAGACTAATGTGACAACCCAAGTTCGTGGAACAATGGGCCACATAGCACCTGAGTATTTATCCACTGGCAGGTCATCGGAAAGGACCGATGTTTTTGGTTATGGTATCATGCTTCTAGAACTTGTCACAGGTCAGCGGGCAATTGACTTTTCACGTTTGGAGGAAGAAGATGAAGTCTTATTGCTTGACCATGTCAAGAAGCTTGAAAGGGAGAAACGACTAAATGATATAGTGGATAACAACTTGAACAAGAATTACGACATTCAAGAGGTGGAAATGCTGATCCAAGTTGCATTGCTCTGCACCCAGCCATCGCCTGAAGACCGTCCGGCTATGTCAGAAGTAGTACGCATGCTGGAAGGAGAAGGGCTTGCTGAGAGGTGGGAAGAATGGCAGCACGTGGAGGTTACTAGGAGGTTAGATCATGAGAGATTGCAAAGAAGATTTGATTGGGGAGAAGATTCGGTTTGTAACCAGAATGCTATTGAATTATCCGGCGGAAGATGA 1830 41.48 MLFKMGKLFLAVLSLASFYSLVVSDYQGDALSTFRSSLKATPNQLSDWTPSQVNPCTWSNIICTANIVTSVSLTSMGFTGTLSSGISVLKNLTTLNLQGNYITGEIPDAFGNLTSLQSLDLTNNSLTGQIPPSLGNLKNLQFLTLNQNDLSGTIPESLSSLPSLVNLLLDSNNLTGEIPEQLFQLPKYNFSGNKLNCGMNTHPCASDNKTSDSANKSKTGIIAGIVGGFTFTILFVGFLFFLLKSRHKGYKREVFEDVAGEDDRRIEFGQLKRFAWRELQIATNNFSEKNVLGQGGFGKVYKGVLSDNTNIAVKRLTDYESPGGDAAFHREVEMISVAVHKNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLREVKPGEPILDWPTRKQVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGRSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDEVLLLDHVKKLEREKRLNDIVDNNLNKNYDIQEVEMLIQVALLCTQPSPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRLDHERLQRRFDWGEDSVCNQNAIELSGGR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1234321 1240989 + Conep08aG0023300.1 Cone8ag0224 442773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0224 609 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515(InterPro)
Cone8ag0224 609 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 184 - -
Cone8ag0224 609 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Cone8ag0224 609 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524(InterPro)
Cone8ag0224 609 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 454 565 - -
Cone8ag0224 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 609 - -
Cone8ag0224 609 FunFam Somatic embryogenesis receptor kinase 1 255 362 - -
Cone8ag0224 609 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cone8ag0224 609 SMART serkin_6 286 560 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0224 609 SUPERFAMILY L domain-like 27 197 - -
Cone8ag0224 609 Gene3D Ribonuclease Inhibitor 24 222 IPR032675 -
Cone8ag0224 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0224 609 SMART LRR_typ_2 89 112 IPR003591 -
Cone8ag0224 609 SMART LRR_typ_2 113 137 IPR003591 -
Cone8ag0224 609 SMART LRR_typ_2 161 185 IPR003591 -
Cone8ag0224 609 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Cone8ag0224 609 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515(InterPro)
Cone8ag0224 609 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0224 609 Pfam Protein tyrosine and serine/threonine kinase 289 560 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0224 609 FunFam Somatic embryogenesis receptor-like kinase 1 363 580 - -
Cone8ag0224 609 SUPERFAMILY Protein kinase-like (PK-like) 267 561 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0224 Cone-Chr8:1234321 Cone8ag0793 Cone-Chr8:7971620 2.51E-154 dispersed
Cone6ag1226 Cone-Chr6:9656277 Cone8ag0224 Cone-Chr8:1234321 1.23E-209 transposed
Cone12ag0232 Cone-Chr12:1231244 Cone8ag0224 Cone-Chr8:1234321 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83099 PF16906 Ribosomal_L26 4.20E-19 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0224 - - - 0.0