Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0235 ATGGCTTCCTCTCTCACCTCTCCTCCTTCCTACTCTCTTTCTCTCTCAAATTTCCAATCTTCACCCCCTCCCATTTCCACCGCCTTTACTCATTGTCTCCGACTCTTCCCTGCAAAATCAATGACGTCCTCTTCTCACGGCTTGAGTCGAAACCTCAGTTTGGGCTTGGGCTCGACCTCATGTGTCGTAATGAAAGCTTCAACTTTGGACTTCTCCTCGGGTTCCTTCTTCGAAGGAGGAGAAGGATTTGGGTCGGTGGAGGACCCGCCTTCTCCTCCCGGATCGGGTCTGACCGCCCTCGAAGATAAGGAAGAGCCGGAATGCCCTCCCGGTCTCCGACAGTACGAGACTATGATGGTTCTCAGACCCGACATGTCGGAAGATGAGCGGCTCACCCTTACCCAGAAGTACGAGGAGTTACTTGTTACCGGAGGGGGAATGTACGTCGAGGTATTCAACCGAGGGGTGATTCCGTTAGCCTATGGCATCAAGACCAAAAACAAAGCCGGAGAATCCAATACTTATTTGGACGGAATCTACCTCCTCTTTACCTACTTCACCAAACCTGAGTCCATTGCCATTCTCGAAGCCACGCTTCAAGCAGATGATGATGTCATCAGATCGACAAGTTTCAAGATAAGGAAGAGGAAAGTTGTTTAG 660 50.45 MASSLTSPPSYSLSLSNFQSSPPPISTAFTHCLRLFPAKSMTSSSHGLSRNLSLGLGSTSCVVMKASTLDFSSGSFFEGGEGFGSVEDPPSPPGSGLTALEDKEEPECPPGLRQYETMMVLRPDMSEDERLTLTQKYEELLVTGGGMYVEVFNRGVIPLAYGIKTKNKAGESNTYLDGIYLLFTYFTKPESIAILEATLQADDDVIRSTSFKIRKRKVV 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1346759 1348295 + Conep08aG0024400.1 Cone8ag0235 442784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0235 219 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 75 217 IPR000529 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)|GO:0070181(PANTHER)
Cone8ag0235 219 Gene3D - 111 218 IPR014717 -
Cone8ag0235 219 FunFam 30S ribosomal protein S6 alpha, chloroplastic 111 219 - -
Cone8ag0235 219 Hamap Small ribosomal subunit protein bS6 [rpsF]. 112 215 IPR020814 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cone8ag0235 219 MobiDBLite consensus disorder prediction 82 109 - -
Cone8ag0235 219 Pfam Ribosomal protein S6 114 212 IPR000529 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
Cone8ag0235 219 CDD bS6_chloro_cyano 112 213 - -
Cone8ag0235 219 SUPERFAMILY Ribosomal protein S6 112 215 IPR035980 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0019843(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0235 K02990 - - vvi:100244408 244.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0240 Cone-Chr12:1295881 Cone8ag0235 Cone-Chr8:1346759 1.82E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g185 Blo02g01162 . . . . Bpe07g00059 . . . . Cma02g00919 . Car02g00669 Car15g01252 . . . . . . . . . . . . . . . . . Cone8ag0235 Cone12ag0240 . . . . . . . . . . . . . Bma12g00618 . Cmo02g00927 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012141 0 1 2 1 1 1 2 1 0 1 1 1 1 1 1 2 0 2 2 0 1 1 1 1 0 1 1 1 1 1 30