Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0238 ATGGGGTGTGCTTCTTCCAAACCTTCAGACGTAGCAGTTGTAGATGTCTACCGACCTGCTCCAACCAGCTTATCCTTGTTCGATATCAACTCCATAGAAGAGCCGTGGCTCAAGGGGGATATTACTCTGCCTGAGCAGCATGAGAAACCCACGAACCTTCCGCCCCCACTAATCGAAAAGCTCAACACGTTAGAGTCTGACACTCCTCATTCATGGAATGAGGTGAGCAAGGCCCTAGAGGTCCTCAAGCCATCTTTGGACCAGAACAATAAGAACTCGGTCAAGGGCGAGACGGTAAAACCACCACCCCCAACTGAGACTGAAGATGTTCAAAACAAGAAAATTCTGGATAAGAGCTGGAGTTCGATCCACACGGTCCAAGAGCTTGACGGGAAGTTGAGAAAGACACAGTCTGCAAAGACAGAATTACCCCCGGTGAAGGCGGATGATCTGGGGAGTGGGGTGAAGAAGACAGTGAAAGAGAACATATTTATAGTGAGAGATAGGTTAGAGAGGGAGAAAGAAGGGAAGCAGGCTATCCTAAGCAAGAGATTGAACCCGCTAGCTGACTACCCTGAGAAGTGCCCGCCAGGCGGGACTGACTCTGTGGTGCTCTACACGACATCATTGAGCGGTGTAAGGCGAACTTACGAGGATTGTAATAAAGTGAGGAACCTTCTAGAACTTCACCAAGTGGTGTTTGACGAGAGAGACGTGGCCTTACATGGCGGCTTTCGGAAGGAGTTGAAGGAGCTGTTGGGTGAAGAAGAAGGGGTGAGTGTTCCAAGGATGTTTGTGAAGGGGAAGTATATAGGTGGGGCAGAGGAGGTGATGGACCTGAATGACCGGGGCCAGCTTGTGAGGATGTTGAGGTGGGCCGGGGTGGAGAGAGGAGTAGGCCGGTTAGGATGTAACGGGTGTGGGGGTGCAAGATTTGTGCCATGTTTTGACTGTGCAGGGAGTTGTAGAGTGGTGAATGGTGATGGGGAGAAGGAGAGGTGTGGCAAGTGTAATGAGAATGGCCTGGTTCATTGCCCTGCTTGTCTTTAG 1050 50.76 MGCASSKPSDVAVVDVYRPAPTSLSLFDINSIEEPWLKGDITLPEQHEKPTNLPPPLIEKLNTLESDTPHSWNEVSKALEVLKPSLDQNNKNSVKGETVKPPPPTETEDVQNKKILDKSWSSIHTVQELDGKLRKTQSAKTELPPVKADDLGSGVKKTVKENIFIVRDRLEREKEGKQAILSKRLNPLADYPEKCPPGGTDSVVLYTTSLSGVRRTYEDCNKVRNLLELHQVVFDERDVALHGGFRKELKELLGEEEGVSVPRMFVKGKYIGGAEEVMDLNDRGQLVRMLRWAGVERGVGRLGCNGCGGARFVPCFDCAGSCRVVNGDGEKERCGKCNENGLVHCPACL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1359960 1361009 - Conep08aG0024700.1 Cone8ag0238 442787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0238 349 SUPERFAMILY Thioredoxin-like 196 291 IPR036249 -
Cone8ag0238 349 Gene3D Glutaredoxin 201 297 - -
Cone8ag0238 349 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 100 348 - -
Cone8ag0238 349 MobiDBLite consensus disorder prediction 84 116 - -
Cone8ag0238 349 FunFam Glutaredoxin family protein 200 298 - -
Cone8ag0238 349 ProSiteProfiles Glutaredoxin domain profile. 191 297 - -
Cone8ag0238 349 CDD GRX_GRX_like 202 345 - -
Cone8ag0238 349 Pfam Glutaredoxin 203 271 IPR002109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0238 K17479 - - rcu:8286244 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0500 Cone-Chr2:2715424 Cone8ag0238 Cone-Chr8:1359960 9.94E-37 dispersed
Cone3ag0132 Cone-Chr3:736654 Cone8ag0238 Cone-Chr8:1359960 3.82E-48 dispersed
Cone12ag0243 Cone-Chr12:1304682 Cone8ag0238 Cone-Chr8:1359960 4.45E-230 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g159 . . . . . . . . . . Cma02g00924 . Car02g00672 . . . . . . . . . . . . . . . . . . Cone8ag0238 Cone12ag0601 . . . . . . . . . . . . . . . Cmo02g00931 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012144 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 30