Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0244 ATGACCTCCTACTCCTACTTCTCCTTCTCATTCTTCTTCTTCTCCCTTTTTTCTACCTTCCTTCTCTTCCATCCTCACCTAGCCTCAAGCGCCGTGATCTGCAAAGATTCCTACTGCCATCTGGTTGAGCCCGCCGTCCGGTTCCCCTTCCGGCTAAAATATTACAACAGTAACCCTCGTTGTGGCTACGCCCCGGATTTTGACCTCTCATGCAACAACCGAAGCCAGACGATCCTAACCCTCCCTCTCTCTGGCAATTTTGTCGTGACCCAGATCGACTACGAAGCGCAAGTCGTTATGATCAACGATCCCGAACACTGCCTTCCGAGAAGATTCTTAGAGGACTTCTCCGTCAAAGATACCCCGTTTCAAGTTGGTAAGTACTTGAACGTAACCTTCTTCAATTGCTCGAGTGCCGATATCAATGAAACGAATACGAGTAATTATCGGATGTTGGAAAGTATACCTTGTCTGAGCGGGGACAATTACATGGTCTTGGCAGCGTTCACCGAGGATATAGAGAATGGTCTTGTCCCAGAAATTCCATGCCGGGCTAAATCGACCGCGTTGGTTCTCTTACCTGTTTGGCAGCATATAGGGACGGGCCTTCATGAAGATATTATGTTGCACTGGACCGACCCGGATTGTACTTATTGTGAATTTCGGGGTGGGGATTGCAGGTTCAAGAGCGATTCAGGATCCGATATTGGATGTTTTAATCTTCCGAAGAACGGTCTTCCGAGGAGTGCAAAGTATGGTTTAGCACTAGGAGTAGGAGTACCAGCACTACTATGCATACTGGGTCTATGCTGTTTCATTTGCGGCAAGCTCCGGTCCCTTACAATGCGGCGTAACCACCGTGCCATGGAGTTATCATCCATAATCGCTCCTCCATCCATCGTCAACCTAACAGGCCTCGACGGGCCCACCATCCAATCCTACCCGAAAACCTTACTAGGCAAGAGCGGGCGATTGCCAAAGCCGAATGACAACATTTGTGCAATATGTTTATCAGAGTACCAGCCGAAAGAAACAATCCGGTCCATACCCGAATGTAAGCACTATTTCCATTCGGAATGCATTGATGAGTGGCTGTCAATGAATGTCACATGTCCTGTTTGTCGGAATACTCCGAGCTCGACCTCTTCTCCGTCTAACTCTGACGCTTCTTCAACTTCATTTTTGTCGTTATAG 1194 48.07 MTSYSYFSFSFFFFSLFSTFLLFHPHLASSAVICKDSYCHLVEPAVRFPFRLKYYNSNPRCGYAPDFDLSCNNRSQTILTLPLSGNFVVTQIDYEAQVVMINDPEHCLPRRFLEDFSVKDTPFQVGKYLNVTFFNCSSADINETNTSNYRMLESIPCLSGDNYMVLAAFTEDIENGLVPEIPCRAKSTALVLLPVWQHIGTGLHEDIMLHWTDPDCTYCEFRGGDCRFKSDSGSDIGCFNLPKNGLPRSAKYGLALGVGVPALLCILGLCCFICGKLRSLTMRRNHRAMELSSIIAPPSIVNLTGLDGPTIQSYPKTLLGKSGRLPKPNDNICAICLSEYQPKETIRSIPECKHYFHSECIDEWLSMNVTCPVCRNTPSSTSSPSNSDASSTSFLSL 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1399617 1401689 + Conep08aG0025400.1 Cone8ag0244 442793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0244 397 CDD RING-H2_EL5-like 332 375 - -
Cone8ag0244 397 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 379 IPR046948 -
Cone8ag0244 397 Pfam Ring finger domain 332 375 IPR001841 -
Cone8ag0244 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 380 IPR013083 -
Cone8ag0244 397 SUPERFAMILY RING/U-box 327 378 - -
Cone8ag0244 397 MobiDBLite consensus disorder prediction 376 397 - -
Cone8ag0244 397 Pfam Wall-associated receptor kinase galacturonan-binding 34 103 IPR025287 GO:0030247(InterPro)
Cone8ag0244 397 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Cone8ag0244 397 SMART ring_2 333 374 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0244 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0437 Cone-Chr11:2199346 Cone8ag0244 Cone-Chr8:1399617 1.59E-11 dispersed
Cone1ag0974 Cone-Chr1:54888060 Cone8ag0244 Cone-Chr8:1399617 6.19E-90 dispersed
Cone8ag0244 Cone-Chr8:1399617 Cone9ag0760 Cone-Chr9:3637166 2.29E-09 dispersed
Cone15ag0459 Cone-Chr15:2153757 Cone8ag0244 Cone-Chr8:1399617 1.73E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35