Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0259 ATGGAAGAAGCTCTGCGAATTTTTTCTTCCATTTTCTTTCTGGGTTTCATTTTCACTATAAGCAAGGCTGAGCCAGTTGAAGATAAGCAAGCTTTGCTAGATTTTGTTAACAATCTTCCTCATTCTCGATCCCTTAACTGGAATGAGAGCTCTCAAGTGTGCAATCATTGGACCGGAGTAACTTGCAGTGGAGATCACGGCCAAGTTATAGCCGTGCGATTGCCCGGAGTTGGATTCCATGGTCCGATTCCGGCCAACACAATTAGCCGCCTTTCCGCCCTGCAAATCTTGAGCCTCAGATCTAATGGTATAAGTGGAAATTTCCCATCTGATTTCTCTAACCTCAGAAACTTATCTTACCTCTATCTTCAGTTCAATAACTTTTCCGGTCCATTGCCTTTAGATTTCTCTGTTTGGAAGAATCTCACTTTTGTAAATCTGTCTAACAATGGCTTCAATGGAAGCATTCCTGATTCCCTTTCTAACTTGACTGAGCTTGCTGGTTTGAATCTTGCAAACAACTCCCTTTCCGGTAAAATTCCGGATCTTCAGTTGCCTAAGTTGCAGCTTCTAAATTTATCCTTTAACAATCTGAATGGTGATGTGCCTGAATCACTTGCTAGATTTCCTCAGTCTGTGTTTCTTGGAAATCACATCTCATTTAAAAATTTAGACCCGGATGTTCCTCCCGTTCCTACGCAACCTTCGTCTGATTCATCATATAAGAAGAAGCCAAGGAGAAATTATGGGAAGCTAGGTGAAACAGCGTTTTTAGGGATTATAATTGCAGGTTCTCTTTTAGGGATTGTAGCATTCGGTTTTCTTGTCCTCGTTTGTTTCTTGATAAAAAAGAGAGAAGATGGTCTTGTCGGGAAATTGCAGAAGGGAGGAATGTCACCTGAAAAGGTGATTTCAAGGACCCAGGATGCTAACAATAGGCTGGTGTTTTTTGAAGGGTGTAGTTATGTGTTTGACTTGGAGGATTTATTGAGGGCTTCTGCCGAGGTGCTTGGAAAAGGTACATTTGGAACGGCCTATAAGGCGATTCTTGAGGATGCAACTGCAGTTGTGGTGAAAAGGTTGAAGGATGTGAGCGTTGGGAAGAGAGATTTTGAGCTGCAGATGGAAATTGTGGGTGGGATTAAGCATGAGAATGTGGTTGAGTTGAAGGCGTATTACTATTCGAAAGATGAGAAGCTTATGGTGTATGATTATTTTAGCCAGGGCAGCATCTCGGCTTTGTTACATGGTAAAAGAGGAGAGGACAAAAAAAACCCTTTGGACTGGGATTCAAGACTCAGAATAGCCGTAGGTGCAGCGAGAGGCATAGCCAGAATCCACGAAGAAAACGGCGGGAAACTAGTCCATGGAAACATCAAATCCTCAAACATCTTCCTCAACTCCAACAGCTATGGCTCCGTATCTGATGTTGGCCTGACCCCAATAATGAGCTCTCTAGCCCCACCCATATCACGAGCAGCCGGCTACCGGGCCCCAGAAGTAACCGACACCCGAAAAGCATCACAGCTGTCCGATATCTTCAGCTTCGGAGTCGTCCTCTTAGAACTCCTCACCGGAAAATCTCCCATTCACACCACTGGGGCAGATGAGATCGTCCACTTGGTCAGGTGGGTCCACTCTGTTGTCCGGGAAGAGTGGACCGCTGAAGTGTTTGACATTGAGCTCATGAGGTTTCCAAACATCGAGGAAGAGATGGTTGAGATGTTGCAGATTGCTATGTCTTGTGTGGCTAGAGTGCCTGATCAGAGACCCAAAATGGTTGATGTGGTGAAGTCGATTGAGAATGTTCGTCCGACTAAAAATGAGGATGGTACTAAGGCTTTGTCGGGAAACAGATCGGAGAGCTCAACCCCTGCCTTGATGGTTTGA 1890 44.71 MEEALRIFSSIFFLGFIFTISKAEPVEDKQALLDFVNNLPHSRSLNWNESSQVCNHWTGVTCSGDHGQVIAVRLPGVGFHGPIPANTISRLSALQILSLRSNGISGNFPSDFSNLRNLSYLYLQFNNFSGPLPLDFSVWKNLTFVNLSNNGFNGSIPDSLSNLTELAGLNLANNSLSGKIPDLQLPKLQLLNLSFNNLNGDVPESLARFPQSVFLGNHISFKNLDPDVPPVPTQPSSDSSYKKKPRRNYGKLGETAFLGIIIAGSLLGIVAFGFLVLVCFLIKKREDGLVGKLQKGGMSPEKVISRTQDANNRLVFFEGCSYVFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKDVSVGKRDFELQMEIVGGIKHENVVELKAYYYSKDEKLMVYDYFSQGSISALLHGKRGEDKKNPLDWDSRLRIAVGAARGIARIHEENGGKLVHGNIKSSNIFLNSNSYGSVSDVGLTPIMSSLAPPISRAAGYRAPEVTDTRKASQLSDIFSFGVVLLELLTGKSPIHTTGADEIVHLVRWVHSVVREEWTAEVFDIELMRFPNIEEEMVEMLQIAMSCVARVPDQRPKMVDVVKSIENVRPTKNEDGTKALSGNRSESSTPALMV 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1498559 1501171 - Conep08aG0027000.1 Cone8ag0259 442808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0259 629 Pfam Protein tyrosine and serine/threonine kinase 335 599 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0259 629 ProSitePatterns Protein kinases ATP-binding region signature. 337 368 IPR017441 GO:0005524(InterPro)
Cone8ag0259 629 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515(InterPro)
Cone8ag0259 629 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515(InterPro)
Cone8ag0259 629 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515(InterPro)
Cone8ag0259 629 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515(InterPro)
Cone8ag0259 629 MobiDBLite consensus disorder prediction 225 246 - -
Cone8ag0259 629 MobiDBLite consensus disorder prediction 609 629 - -
Cone8ag0259 629 MobiDBLite consensus disorder prediction 605 629 - -
Cone8ag0259 629 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cone8ag0259 629 Gene3D Ribonuclease Inhibitor 26 235 IPR032675 -
Cone8ag0259 629 ProSiteProfiles Protein kinase domain profile. 331 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0259 629 SUPERFAMILY L domain-like 38 211 - -
Cone8ag0259 629 Gene3D Transferase(Phosphotransferase) domain 1 406 622 - -
Cone8ag0259 629 FunFam Probable inactive receptor kinase RLK902 25 184 - -
Cone8ag0259 629 FunFam pollen receptor-like kinase 1 300 405 - -
Cone8ag0259 629 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 406 614 - -
Cone8ag0259 629 PANTHER OS05G0588300 PROTEIN 13 610 IPR050994 -
Cone8ag0259 629 SUPERFAMILY Protein kinase-like (PK-like) 335 600 IPR011009 -
Cone8ag0259 629 Gene3D Phosphorylase Kinase; domain 1 299 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0036 Cone-Chr14:262524 Cone8ag0259 Cone-Chr8:1498559 8.54E-159 dispersed
Cone15ag0037 Cone-Chr15:259168 Cone8ag0259 Cone-Chr8:1498559 5.73E-68 dispersed
Cone3ag0485 Cone-Chr3:2368876 Cone8ag0259 Cone-Chr8:1498559 3.42E-157 dispersed
Cone5ag0660 Cone-Chr5:2816135 Cone8ag0259 Cone-Chr8:1498559 1.14E-171 dispersed
Cone7ag0668 Cone-Chr7:3576910 Cone8ag0259 Cone-Chr8:1498559 6.08E-124 dispersed
Cone7ag1355 Cone-Chr7:9848049 Cone8ag0259 Cone-Chr8:1498559 3.39E-50 dispersed
Cone8ag0259 Cone-Chr8:1498559 Cone15ag1009 Cone-Chr15:8168530 1.61E-49 dispersed
Cone12ag0265 Cone-Chr12:1407746 Cone8ag0259 Cone-Chr8:1498559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83102 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0259 - - - 0.0