Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0274 ATGACGGGAACTATGATAACACAGCCGTCCAAAGAGGCTGCCGCCGGAAATAAAATTCCGGTGAAGCAGCAATCGGTTACGTTTCTGATATCACAAGTAATGACCTCCTTGGTCGATTCCTTGGTTTTGCACCTGCAACCAACTCACCGAAGCGACCCTGCCGATTTCACTCGTCTTTGTCTGCAGCTCTCCAGATGTATTGACATTGCTGTTGTAAAAAATGAGGTTCCATTCAGAGCGAATGACATACCATCTCTACTCAAACAGATCTGCCAACATAAAATTGATTACCGTCTACAAGCACCTCTCTTGGTACTGTTGATCTCTATCAAGGATGCTTGCAGGAAAGGGTGGTTTTCGAAAATGGATTCTGAAGAACTTTACCGCTTTGCTAAAGAGATTGGTAGCAGCTTTGGTGCACCTGCAGATCGTAGTAGTGGAGTTAGCTCTTATTCTTCCACTATTGCAGAAGTTATGGACAGGTTTTATCCACAGATGAAGATGGGTGAGATCCTTGCTTCTCTTGAAGTTAAGCCCGGATATGGAGCATTCACTATTGATTTTCATGTTCCAAAGGACACAACAATGTCTCCACGAGAAAAAATTTGGTTATTGGTTGCTCAAAAAGATAACACGCAGACTGCTGCATGTATAGTAAGTCCCCCTCAAGTAAATTTTCTTGTCAACGGTAGGGGAGTAGAGAGGAGGACCAATGTCTTTATGGACATTGGGCCACAGCTACCTACAAATATAACTCATATGCTCATATATGGGTCGAATCTTCTTCAGGTTGTAGGCCAATTCAACGGTCATTACATTATAATAGTTGCCTATATGAGTATGAGATCCTCACCTGACACCTCAGTGCTACAGGATTATGTTCAACCTACTATTGCTGATGTACATTCAGATCCCGATATAATCGAGGGGCCATCACGAATATCACTCAATTGTCCTATAAGCTTTAAAAGAATCAAGGTTCCTGTCAAAGGTAGTTCCTGTAATCATCATCAGTGTTTTGATTTGAATAACTTTCTCGATATCAATTCAAGAAGGCCATCTTGGCGCTGCCCCCATTGTAACCGCTCTGTCTGCTACTTGGACATTCGTATTGACCAAAACATGGTCAAGGTCTTGAGGGGGTTAGGAGAGAGCATTTCATCCAAGGGCTCACGGGAAACCATTCTTGAAACTGATGACAATGTTATGGAAGTGATCATCGCATCCAATGGCTCATGGAGAGCCGTTCTCGAAAGTGATGACAATGTGGGTCAGGCCTGGAATAATACTCTCATTCACCAAAACCAAAGGCCCGAACAGCAAGAAGAGTCCTCAATCCTCCCAAATGCCCATCCTCCGAATGTGATCGACCTTACCAAAGGCAATGATTATATGATGGACCCGGTTGGTGGGGCCGAAGTTGAGGAGGACCAGAAACTCACAAATTTAATCATGCCATTAGAAACAAACCCAAGTAGTCTCGAGCAGAATCTGATTGCTCAAGCCGAGAATGGTTTCCGGTCAACCTCTAGTGTTCGGGCAGGTGTCCCCACATCTCCACTTCCTCAAAGACCTGAATTTCCCTGGCAGTTTAGTCAGGCGATCACTCCAATGAATACTCAATCTACTCCAGTAAATAATATTTCTATACCAAACCCGAGATCTGCAACCATGATCCCAGCACAATCTCTAGCATCAACACATCAACAAATAATAAATCCCTCTGGTCCAAATATTCCCTCAATTCCTCAGAGGCCGCCAATAATCCCTACTGCAAGTAGTAGTCTTCCATCTCCACATGCTAGTAGTAGACCACCACCTCCTCCTGGCTTTTTATCTCAATTCCAGAATTCACACCTTCAGCAAACTCTTAACCCGAGGTTCCCACACTCCATGGGACAGTATTCAAGAACAGTCCAACATCAACCTTTGCTTGCTACTGCTCAGAGGGATGCTGAAAAATATGGTCGGCCATCTTTATTACAAGGCCAAAATCAGACCACTCCAACTGGAAATTCTACTCAAGTGGGTATTAATGGTTTAAGAACATCGGTTGGAGAACAAAGCGGTAATAAAAGTAATGGGCCGGGGGATTCACCGTTGGAGCAAAGCTGGAGGCCTACGGGCCGGATGCGTGGAAGCTTGTCAGGCCAGGCTTATGCCGATGCTCTTAACAAGTTATTGAATCAGCCGAATCGAGTTTCAAATCCTACTAGACCGTTAAACTCAACCTCGACTAGACCTACTGCTCTATTTCCGCCTTGTGACAACTAA 2274 44.33 MTGTMITQPSKEAAAGNKIPVKQQSVTFLISQVMTSLVDSLVLHLQPTHRSDPADFTRLCLQLSRCIDIAVVKNEVPFRANDIPSLLKQICQHKIDYRLQAPLLVLLISIKDACRKGWFSKMDSEELYRFAKEIGSSFGAPADRSSGVSSYSSTIAEVMDRFYPQMKMGEILASLEVKPGYGAFTIDFHVPKDTTMSPREKIWLLVAQKDNTQTAACIVSPPQVNFLVNGRGVERRTNVFMDIGPQLPTNITHMLIYGSNLLQVVGQFNGHYIIIVAYMSMRSSPDTSVLQDYVQPTIADVHSDPDIIEGPSRISLNCPISFKRIKVPVKGSSCNHHQCFDLNNFLDINSRRPSWRCPHCNRSVCYLDIRIDQNMVKVLRGLGESISSKGSRETILETDDNVMEVIIASNGSWRAVLESDDNVGQAWNNTLIHQNQRPEQQEESSILPNAHPPNVIDLTKGNDYMMDPVGGAEVEEDQKLTNLIMPLETNPSSLEQNLIAQAENGFRSTSSVRAGVPTSPLPQRPEFPWQFSQAITPMNTQSTPVNNISIPNPRSATMIPAQSLASTHQQIINPSGPNIPSIPQRPPIIPTASSSLPSPHASSRPPPPPGFLSQFQNSHLQQTLNPRFPHSMGQYSRTVQHQPLLATAQRDAEKYGRPSLLQGQNQTTPTGNSTQVGINGLRTSVGEQSGNKSNGPGDSPLEQSWRPTGRMRGSLSGQAYADALNKLLNQPNRVSNPTRPLNSTSTRPTALFPPCDN 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1592278 1597766 + Conep08aG0028900.1 Cone8ag0274 442823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0274 757 MobiDBLite consensus disorder prediction 562 615 - -
Cone8ag0274 757 Pfam MIZ/SP-RING zinc finger 314 362 IPR004181 GO:0008270(InterPro)
Cone8ag0274 757 MobiDBLite consensus disorder prediction 562 578 - -
Cone8ag0274 757 MobiDBLite consensus disorder prediction 435 455 - -
Cone8ag0274 757 MobiDBLite consensus disorder prediction 728 757 - -
Cone8ag0274 757 CDD SP-RING_PIAS-like 315 362 - -
Cone8ag0274 757 ProSiteProfiles Zinc finger SP-RING-type profile. 303 384 IPR004181 GO:0008270(InterPro)
Cone8ag0274 757 MobiDBLite consensus disorder prediction 579 593 - -
Cone8ag0274 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 415 IPR013083 -
Cone8ag0274 757 MobiDBLite consensus disorder prediction 659 701 - -
Cone8ag0274 757 MobiDBLite consensus disorder prediction 728 751 - -
Cone8ag0274 757 MobiDBLite consensus disorder prediction 659 714 - -
Cone8ag0274 757 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 80 570 - GO:0000790(PANTHER)|GO:0016925(PANTHER)|GO:0061665(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0274 K04706 - - mdm:103439193 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0281 Cone-Chr12:1519281 Cone8ag0274 Cone-Chr8:1592278 0 wgd
Cone8ag0274 Cone-Chr8:1592278 Cone9ag0814 Cone-Chr9:3913772 6.20E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g49 . Blo03g00224 . . . Bpe07g00096 . . . . Cma02g01422 . Car02g01191 Car15g01131 . . Cpe05g00363 . . . . . . . . . . . . . . Cone8ag0274 Cone12ag0281 . Cone9ag0814 . Csa05g00237 Chy09g01264 . . . . . . . . Bma12g00067 . Cmo02g01456 Cmo15g01319 . . . . . Cpe13g00131 Bhi12g00325 . . Lac11g2043 Hepe06g1509 . Lcy12g1608 . . . . . . . Lsi09g00214 . . Cme09g01803
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003920 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 2 1 1 1 1 1 1 2 1 2 1 3 42