Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0275 ATGGCGTATGAACTCGCGGAGCAGGCTAAGGAAGCATTTGTGGACGATAATTTTGAACAATCCATCAAACTTTATACCCAGGCCGTTAGTTTAAACCCTAGAAACGCTGACTTTTTTGCCGACCGTGCACAGGCCAATATCAAGTTCTGCAATTTCACTGAAGCTGTTGCAGATACAAACAAGGCAATAGAACTTGATTCTTCAATGGCCAAGGCATACCTGCGTAAAGGCATTGCTTGTATTAAGCTTGAAGAGTATCATACTGCGAAGGCAGCCCTTGAAAAAGGAGCAGCATTAGCAGCTACTGATTCAAGATTCATCAGGTTGATTGAGGAATGTAAACAGTACATTGCAGAGGAAACCAGTGTTAATTTGTTACCAAGTGTTGCACCTGCTTCTTCTGCCAGTTCCCAGCCTACTGTACCTCCAATAACTGTTGAAGAGTTACCTGATCAAAAAAAGAACACATTCACACCAGCCAAACCCAAATATCGACATGAGTACTACCAGAAGCCAGAGGAAGTAGTTGTCACAATATTTGCAAAGGGTGTACCTGCAAAAGATGTGATTGTTGACTTTGGTGAACAGATTCTTAGTGTTACCATTGAATTGCCTAATGAAGATGTTTACCATTTTCAGCCTCGATTGTTTGGGAAGATAATACCCGATAAGTGTAGATATGAGGTGTTGTCAACCAAGGTTGAAATACGTCTGACTAAAGCTGAAGCCATCCATTGGGTGTCTCTTGAATATAGTAGCGACATTGCCATCAGACCGAAAGTAAATGTTTCATCAGTTGCAGTTGCAACTCAGAAGCTTACATACCCATCTTCAAAGCCAAGAATCCTGGATTGGGATAAATTGGAAGCTCAGGTGAAGAAAGAGGAAAAGGATGAGCAGCTAGATGGTGATGCAGCGCTGAATAAAATGTTCAGAGACATATACCAAAATGCAGACGAAGACACGAGGAGAGCTATGAGCAAATCTTTCGTGGAGTCAAATGGGACAGTGCTGTCGACCGACTGGAAGGAAGTGGGTTCGAAGAAGGTCGAAGGAAGTGCTCCCGATGGCATGGAGTTGAGGAAATGGGAGTATTGA 1098 42.9 MAYELAEQAKEAFVDDNFEQSIKLYTQAVSLNPRNADFFADRAQANIKFCNFTEAVADTNKAIELDSSMAKAYLRKGIACIKLEEYHTAKAALEKGAALAATDSRFIRLIEECKQYIAEETSVNLLPSVAPASSASSQPTVPPITVEELPDQKKNTFTPAKPKYRHEYYQKPEEVVVTIFAKGVPAKDVIVDFGEQILSVTIELPNEDVYHFQPRLFGKIIPDKCRYEVLSTKVEIRLTKAEAIHWVSLEYSSDIAIRPKVNVSSVAVATQKLTYPSSKPRILDWDKLEAQVKKEEKDEQLDGDAALNKMFRDIYQNADEDTRRAMSKSFVESNGTVLSTDWKEVGSKKVEGSAPDGMELRKWEY 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1597170 1601572 - Conep08aG0029000.1 Cone8ag0275 442824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0275 365 SMART tpr_5 70 103 IPR019734 GO:0005515(InterPro)
Cone8ag0275 365 SMART tpr_5 36 69 IPR019734 GO:0005515(InterPro)
Cone8ag0275 365 SMART tpr_5 2 35 IPR019734 GO:0005515(InterPro)
Cone8ag0275 365 Pfam CS domain 165 240 IPR007052 -
Cone8ag0275 365 CDD p23_CS_SGT1_like 167 250 - -
Cone8ag0275 365 Gene3D Tetratricopeptide repeat domain 1 124 IPR011990 GO:0005515(InterPro)
Cone8ag0275 365 Pfam SGS domain 284 363 IPR007699 -
Cone8ag0275 365 ProSiteProfiles CS domain profile. 161 250 IPR007052 -
Cone8ag0275 365 PANTHER PROTEIN SGT1 HOMOLOG 5 363 IPR044563 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0050832(PANTHER)|GO:0051087(InterPro)
Cone8ag0275 365 FunFam Protein SGT1 homolog A 159 264 - -
Cone8ag0275 365 ProSiteProfiles SGS domain profile. 274 365 IPR007699 -
Cone8ag0275 365 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515(InterPro)
Cone8ag0275 365 SUPERFAMILY HSP20-like chaperones 157 256 IPR008978 -
Cone8ag0275 365 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515(InterPro)
Cone8ag0275 365 Gene3D - 162 252 IPR008978 -
Cone8ag0275 365 Pfam Tetratricopeptide repeat 70 101 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0275 K12795 - - rcu:8287441 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1200 Cone-Chr1:55886175 Cone8ag0275 Cone-Chr8:1597170 4.68E-155 dispersed
Cone12ag0282 Cone-Chr12:1525209 Cone8ag0275 Cone-Chr8:1597170 1.64E-47 wgd
Cone5ag0900 Cone-Chr5:3859751 Cone8ag0275 Cone-Chr8:1597170 3.47E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g48 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0275 . . . . . . . . . Bda07g01908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40