Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0284 ATGGCTGGAGAGATTTCATGTGAAGATAAATCAATCATTAACCACAATAATATGGCTACTAATACTAATTCAAGTACCGGGTTTGGCTATTCGAATCATGATAATCCGAGCATCGATCATCAAGCTGGTGAGTTCAGAAACCCGATCCAATACCAATCAGAGATCTTCAACTTAACTACAGGCATGGAGAATATGATAGGGTTTTCGAAGAATCTACACCGTCCATCTTCTTCAAAAACGAGAATCGATGAATCAACAGCTCAAGATTTCTATCACCATGATCATGATCATAATCAGAATCTAATGGTTGGACCTAATAATTGGCAAGAGAACAGATTCCCACTTGTTGATGAGGAGGAAGATGATTCTTCTTCTTTAAGATGTGTTTTTCCTTGTGAAGGAAATGAAAGGCCAAGTCAAGGTCTGTCACTCTCTCTCTCTTCAGCCAACCCTTCTTCTATCGGCTTACAATTTTTCGAGCTCCGGCAAACGTCCTCGACCAATCATCATCAGCCGCATCAGCAAGTTTTAACCCGAGAAGGGTTTTTCGAACAACAAAGCCAACTTCTTCTTAAAAATTCTAAGTACTTAATCCCGGCTCAAGAGCTTCTAAACGAGTTTTGTAGCCTCGGTTTGAAACAAAACAGTTCGCATAAGAACAAGCAACAGATGGATCAATCGGAAGATCTTCTTAATCCCAGTAGTTCTTCGAGAAAGCAACCGCTTTTCTCGCTTGATTTCATCGAATTGCAAAAACGGAGAACCAAGCTTTACACAATGCTTGAAGAGCTTGAAAGAAGATATCGACACTACAGCGACCAGATGATGGCGGTCGTATCATCTTTCGAAGCGGTAGCAGGGCTGGGGACGGCGAGAGTTTACACCTCATTGGCTTCAAAAGCCATGTCAAGACATTTCAAGTGTTTAAAAGATGGGATTGTGAACCAAATTCAAGCTATAAAGAAGGCCATGGGAGAAAAAGACCCAGTTGCCCCCGGCGCGAGTCGAGGTGAAACACCTAGGCTACGGGTTCTTGATCAAGCCTTGAGACAACAAAGAGCTTTCCAACAAATGACTTTAATGGAGACTCATCCATGGCGGCCTCAACGGGGTCTTCCGGAACGCTCCGTTTCAATTCTTCGTGCTTGGCTTTTCGAGCACTTCCTTCACCCGTATCCAAGCGATGTTGATAAACATATTTTAGCTCGCCAAACAGGCCTTTCAAGAAGCCAGGTATCAAATTGGTTTATAAACGCAAGGGTGAGACTATGGAAGCCAATGGTGGAAGAAATGTACATGGAAGAAGTAAAAGAGCAAGAGCAAGACAACATGACCATAATCAACAACATGATTTCTTCAGATGGAGTACTTTCGGATTTCGGCCTGAATGAAAACCCGACCCAAACCCATCCGGAAGACCAAAAGCCAACCACAGACCAACTCTTAAGAATCGACTCTGAATGCCTCTCTTCCATAATCACCAACAACCGGCCCGACAAAAACATCACTCACGATTACTCCAAAACCACCTCCAACAAATTCTATAACTTCCAACCCCACCATGATCAGCATTTGAATTTCGGAAGGGTCGGAGAAGGTTTCGGGTCAATGGAGCTTGACTTCTACTCAGCAGCAGCCGCTACAAGTGGCAGCGGGGTGTCATTGACATTGGGGTTGCAACAACATGGAGGGCATGGGGTGAGTTTAGGAGCAATCGCTTCTCCTGTTAATTCTCAAAGCTCATCACTCTTTTATGCAAGAGATCAGATGGACCAGGATTGCCAACAAGTTGTTCAATACTCACTCTTAGATGGGGATCAGACGGTGCAGAATAATTTGCCGTACAGGAATCTGATGGGGGCCCAGTTACTTCATGACTTGGCCTAA 1887 43.93 MAGEISCEDKSIINHNNMATNTNSSTGFGYSNHDNPSIDHQAGEFRNPIQYQSEIFNLTTGMENMIGFSKNLHRPSSSKTRIDESTAQDFYHHDHDHNQNLMVGPNNWQENRFPLVDEEEDDSSSLRCVFPCEGNERPSQGLSLSLSSANPSSIGLQFFELRQTSSTNHHQPHQQVLTREGFFEQQSQLLLKNSKYLIPAQELLNEFCSLGLKQNSSHKNKQQMDQSEDLLNPSSSSRKQPLFSLDFIELQKRRTKLYTMLEELERRYRHYSDQMMAVVSSFEAVAGLGTARVYTSLASKAMSRHFKCLKDGIVNQIQAIKKAMGEKDPVAPGASRGETPRLRVLDQALRQQRAFQQMTLMETHPWRPQRGLPERSVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYMEEVKEQEQDNMTIINNMISSDGVLSDFGLNENPTQTHPEDQKPTTDQLLRIDSECLSSIITNNRPDKNITHDYSKTTSNKFYNFQPHHDQHLNFGRVGEGFGSMELDFYSAAAATSGSGVSLTLGLQQHGGHGVSLGAIASPVNSQSSSLFYARDQMDQDCQQVVQYSLLDGDQTVQNNLPYRNLMGAQLLHDLA 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1635714 1639800 - Conep08aG0029900.1 Cone8ag0284 442833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0284 628 Gene3D - 369 431 - -
Cone8ag0284 628 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 150 465 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone8ag0284 628 SUPERFAMILY Homeodomain-like 367 433 IPR009057 -
Cone8ag0284 628 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677(InterPro)
Cone8ag0284 628 MobiDBLite consensus disorder prediction 218 238 - -
Cone8ag0284 628 CDD homeodomain 366 427 IPR001356 GO:0003677(InterPro)
Cone8ag0284 628 SMART prehox3 185 315 IPR006563 -
Cone8ag0284 628 Pfam Associated with HOX 191 313 IPR006563 -
Cone8ag0284 628 Coils Coil 247 274 - -
Cone8ag0284 628 FunFam BEL1-like homeodomain protein 4 369 431 - -
Cone8ag0284 628 SMART HOX_1 366 430 IPR001356 GO:0003677(InterPro)
Cone8ag0284 628 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0085 Cone-Chr12:466788 Cone8ag0284 Cone-Chr8:1635714 1.69E-82 dispersed
Cone17ag0921 Cone-Chr17:7231823 Cone8ag0284 Cone-Chr8:1635714 2.45E-44 dispersed
Cone4ag1938 Cone-Chr4:13683402 Cone8ag0284 Cone-Chr8:1635714 1.82E-65 dispersed
Cone7ag1850 Cone-Chr7:11983330 Cone8ag0284 Cone-Chr8:1635714 5.79E-66 dispersed
Cone8ag0088 Cone-Chr8:468633 Cone8ag0284 Cone-Chr8:1635714 5.55E-85 dispersed
Cone8ag0284 Cone-Chr8:1635714 Cone8ag1218 Cone-Chr8:10314758 5.43E-73 dispersed
Cone12ag0290 Cone-Chr12:1567141 Cone8ag0284 Cone-Chr8:1635714 0 wgd
Cone6ag0798 Cone-Chr6:4056769 Cone8ag0284 Cone-Chr8:1635714 2.87E-128 wgd
Cone8ag0284 Cone-Chr8:1635714 Cone9ag0798 Cone-Chr9:3829853 6.18E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46636 PF00244 2014/3/3 2.50E-78 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0284 - - - 0.0