Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0288 ATGCCAGAAATCAAAGACCAAAATTCGTTTATCAGAGAGAATGAAGACCCGTTTTTGCTCAGATCCGAACCGGTTTCTGAACAGTTTACTATGAAACTTGGGCCATCAGTAAAGCCCATAAAAGAAATACTGACTTTGGAGCTTGGACTTCGAACATTGGGGCATGGTAAGAAAGCAGAGCTGAATCTCACTCTTAAGTTGTTTTTCTTTGCGGGATTTATTGCAAGAAAGAGCGCAGTTGAGCACCATTTGCAGGATGATCATAAGAAAGCCATTGTTGATGACGAAGATACTTATTTTGTTGAAGAAGTCGATAATGATGATCGCAACGTGACTTTATGTGAAGTGAAAAAGAGGGATTTTACAAAGTTAGAGCTGAAACCTGAGCACCTCAATCGACCTTTGCCTGAGTCTATGCCTGAATACAACCTTACACCGCACTCATTATACGCGGCTGTTTCGGTTGGTCTTGAAACAGAAACAATAATTGCTGGATCAAATGGAAGTGATGGGTTTACTAGCAAGGCGTTGGGTGAACTTACCACTGGTCATGGTGGGCTTCTAAATGAAGCAGAAGTTGCTGCTGCAGCTGAGGAAAAACAAACTCATGCATTTGAAATTGACGCTTCCCAGGTCGAGAACGTAAAGCAACGTTGCTTGGCAGAGGCTTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAACGATACTGTCAATCCTGATCTTGAAATGGAACTGAAGCCTCAAGCTCAACCTCGACCCTATCAAGAAAAAAGTCTTAGTGAAATGTTTGGAAATGGCACAGCAAGATCTGGCATTATTGTGCTTCCTTGTGGAGCTGGAAAGTCTCTAGTTGGAGTTTCTGCAGCTTCCCGTATAAGAAAAAGTTATCTTTGCTTAGCAACAAATCCTGTTTCAGTAGATCAATGGGCCTTTCAGCTTAAGCTTTGGTCAACAATACGAGATGAACAGATCTGTCGATTCACATCTGATAGGAAAGAGAGATTCAGAGGCAATGCTGGGGTGGTGGTCACAACTTATAACATGATTGCTTTTTCAATGATGCATGTGGTTCCTGCTCATATGTTTCGAAAAGTTATCAGCTTGATGAAATCTTATTGCAAGCTTGGACTTGCTGCTACTCTTGTGAGAGAGGATGAAAGAATTACAGATTTGAACTTCCTTATTGGTCCCAAATTTAAGTTCCGAGCATGCAAGTTTCTCATACGGTTCCATGAACAGCAACATGTTGATAAGATAATCGTCTTTGCTGATAATCTTTTCGCACTTACGGAATATGCAATGAAGCTTCGGAAACCTATGATCTATGGTGCTACCAGTCATGGTGAGAGAAAAAAGATTCTTGATGCTTTCAAAACTAGCCGGGATGTGAATACAGTTTTCCTCTCCAAGGTGGGTGATAGCTCTATAGATATTCCAGAGGCGAAATGTGATTATTCAAATATCATCACATGCGGGTTCAAGATGACAGGAGATACACAGGAAATGTACTACTCAACTAAAAGACAGCAGTTTTTGATTGATCAAGGTTATAGCTTTAAGCTTGCACCGCCTGTTTCCGGACCTGATTTGAGCTATTACAAACTTCAGGACCAGCTGGCACTTCTTGGAAAGGTCTTAAGTGCTGGCGATGATCTTGTGGGACTAGAACAACTAGATATGTATACATATATGCTAAATTTTTTCTTTTTCGTTTCCTCAAGGGGTTTTGTATACATATATGGAGGATACATATCAACTTAG 1767 40.63 MPEIKDQNSFIRENEDPFLLRSEPVSEQFTMKLGPSVKPIKEILTLELGLRTLGHGKKAELNLTLKLFFFAGFIARKSAVEHHLQDDHKKAIVDDEDTYFVEEVDNDDRNVTLCEVKKRDFTKLELKPEHLNRPLPESMPEYNLTPHSLYAAVSVGLETETIIAGSNGSDGFTSKALGELTTGHGGLLNEAEVAAAAEEKQTHAFEIDASQVENVKQRCLAEALNYPMLEEYDFRNDTVNPDLEMELKPQAQPRPYQEKSLSEMFGNGTARSGIIVLPCGAGKSLVGVSAASRIRKSYLCLATNPVSVDQWAFQLKLWSTIRDEQICRFTSDRKERFRGNAGVVVTTYNMIAFSMMHVVPAHMFRKVISLMKSYCKLGLAATLVREDERITDLNFLIGPKFKFRACKFLIRFHEQQHVDKIIVFADNLFALTEYAMKLRKPMIYGATSHGERKKILDAFKTSRDVNTVFLSKVGDSSIDIPEAKCDYSNIITCGFKMTGDTQEMYYSTKRQQFLIDQGYSFKLAPPVSGPDLSYYKLQDQLALLGKVLSAGDDLVGLEQLDMYTYMLNFFFFVSSRGFVYIYGGYIST 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1660045 1665199 - Conep08aG0030300.1 Cone8ag0288 442837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0288 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 264 401 IPR014001 -
Cone8ag0288 588 PANTHER RAD25/XP-B DNA REPAIR HELICASE 357 400 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
Cone8ag0288 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 400 IPR027417 -
Cone8ag0288 588 CDD DEXHc_XPB 245 389 - -
Cone8ag0288 588 SMART ultradead3 249 412 IPR014001 -
Cone8ag0288 588 Gene3D - 369 487 IPR027417 -
Cone8ag0288 588 Gene3D - 242 362 IPR027417 -
Cone8ag0288 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 484 IPR027417 -
Cone8ag0288 588 Pfam ERCC3/RAD25/XPB C-terminal helicase 499 556 IPR032438 -
Cone8ag0288 588 Pfam ERCC3/RAD25/XPB C-terminal helicase 394 485 IPR032438 -
Cone8ag0288 588 Pfam Type III restriction enzyme, res subunit 252 355 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0288 K10843 - - vvi:100250174 573.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0294 Cone-Chr12:1596705 Cone8ag0288 Cone-Chr8:1660045 1.17E-250 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1