Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0289 ATGAGCGGCCATGACTCCAAGTACTTCTCCACTACTAAAAAGGGAGAGATCCCTGAGCTCAAAGAGGAGCTCAATTCACAGTACAAGGATAAGAGAAAAGATGCTGTAAAAAAGGTGATTGCTGCAATGACTGTTGGGAAGGATGTATCATCGCTGTTCACAGATGTGGTGAATTGCATGCAAACAGAAAATTTGGAGCTGAAAAAGCTTGTTTATTTATATCTTATCAATTACGCTAAAAGCCAGCCTGATCTAGCAATACTTGCAGTAAACACGTTTGTCAAGGATTCACAAGACCCAAATCCCTTAATTCGTGCTCTGGCTGTACGAACAATGGGATGCATACGTGTTGATAAAATTACAGAATATCTTTGTGATCCCCTTCAGAGGTGCCTCAAGGATGATGACCCTTATGTTCGTAAGACAGCAGCCATTTGTGTTGCCAAGCTTTATGACATAAATGCTGAGTTAGTTGAGGATAGGGGGTTTCTGGACTCTCTCAAGGACTTGATATCAGACAATAATCCAATGGTTGTTGCAAATGCTGTGGCAGCTCTTGCAGAGATCCAAGAAAATAGTGCTAGACCCATATTTGAAATCGATAGTCACACACTGTCAAAGCTCCTTACTGCTCTAAATGAGTGCACAGAGTGGGGTCAAGTGTTTATACTGGATGCACTTTCTAGATACAAGGCAGCTGATGCTCGTGAGGCCGAAAATATAGTCGAGAGAGTTACTCCACGGCTACAACATGCTAATTGTGCAGTTGTACTATCAGCTGTCAAGATGATTCTCCAACAAATGGAACTTATCACAAGCACTGACGTTGTTCGCAACCTTTGCAAAAAGATGGCTCCTCCTCTTGTGACTCTACTTTCCGCAGAACCTGAGATACAGTATGTTGCATTACGAAATATAAACCTTATTGTACAAAGAAGGCCAACAATCCTTGCCCATGAAATCAAGGTTTTTTTCTGCAAGTACAATGACCCAATATATGTGAAGATGGAAAAATTAGAAATCATGATTAAGCTTGCTTCAGACCGAAATGTAGATCAGGTTCTATTAGAGTTTAAAGAGTATGCCACTGAAGTAGATGTAGAGTTTGTGAGGAAGGCTGTCCGTGCCATTGGTCGCTGTGCCATCAAGTTAGAGAGAGCAGCTGAGCGGTGCATAAGTGTGTTGCTTGAGCTGATCAAGATTAAAGTGAACTATGTGGTTCAAGAGGCTATTATAGTCATCAAGGATATATTTAGAAGATATCCTAACACTTATGAGTCGATCATTGCTACACTTTGTGAGAGCTTAGACACTCTGGATGAGCCAGAAGCCAAGGCATCGATGATTTGGATCATTGGTGAATATGCAGAAAGAATTGACAATGCAGATGAGCTCCTTGAAAGCTTTTTGGAGAGTTTTCCAGAAGAGCCAGCTCAAGTCCAGTTGCAATTGCTGACGGCAACGGTGAAACTTTTTCTTAAGAAGCCAACTGAAGGCCCACAGCAGATGATTCAGGTAGTTTTAAATAATGCCACTGTGGAGACAGACAATCCTGACTTGCGGGATCGTGCATATATTTATTGGCGTCTCCTATCAACTGATCCTGAGGCAGCTAAAGATGTTGTTTTAGCTGAGAAGCCTGTGATCAACGATGACTCAAACCAGCTTGATTCGTCTCTTCTTGATGAGCTTCTTGCTAACATTGCTACACTGTCCTCTGTGTATCACAAGCCCCCTGAAACGTTTGTAACTCGTGTGAAAGCTACAGCTCAAAGAGCTGACGACGAAGATTACCCCGAGGGGAGTGAAACAGGTATTTCAGAAATATCTGCTCAAGTTCCTGATGGTGGCACATCACCTCCAACTAGCTCAAGTTCACAATATTCTGCCACAAGGCAACAAGCCTCTTCACAGTCTCCACCTCCTGCCCCAGTGCCGGATTTACTTGGTGATTTGATTGGCCTGGATAATAGTGCTATTGTTCCAGTTGATCAGCTGCATGCTACTCCCTCTGGGCCCCCATTGCCCATTGTACTACCAGCATCAACTGGTCTAGGTTTGCAAATCAGTGCACAGCTAACTAGACGAGATGGTCAAATATTCTACAGTGTGCTATTCGAGAACAACACACAGGTTCCACTTGACGGGTTTATGATCCAGTTTAACAAGAACACATTTGGTGTTGCAGCTGCTGGACCCCTGCAGGTTCCAGTATTGCAACCAGGCACATCAGCAAGCACTCTTTTACCTATGGTTTTGTTCCAGAATGTGTCTCAAGGTCCTCCTAGCTCACTCTTACAGGTTGCTGTGAAAAACAATCAGCAACCAGTTTGGTATTTTAATGATAAGATGTCATTGCACGTGTTCTTCTCTGAGGATGGCCAAATGGAACGTTCAAACTTTCTTGAGACATGGAGGTCTCTGCCGGACTCGAACGAGGTTTCCAAGGACTTACCCAGCCTTGTAATAACTAATGTGGAACCGACCTTAGACCGATTGGCTGCTTCAAACATGTTCTTTATTGCAAAGAGGAAGCATGCGAACCAAGATGTGTTCTACTTCTCTGCTAAAATCCCGGGAGGAGTTCCTTTTCTGATCGAGCTTACTACTGTTATCGGAACCCCTGGAGTGAAATGCGCTATCAAAACTCCAAGCACTGAAATCTCTCCGCTTTTCTTTGAAGCTGTTGAGACTCTCCTCAGTTGA 2706 43.42 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLDSLKDLISDNNPMVVANAVAALAEIQENSARPIFEIDSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNVDQVLLEFKEYATEVDVEFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVINDDSNQLDSSLLDELLANIATLSSVYHKPPETFVTRVKATAQRADDEDYPEGSETGISEISAQVPDGGTSPPTSSSSQYSATRQQASSQSPPPAPVPDLLGDLIGLDNSAIVPVDQLHATPSGPPLPIVLPASTGLGLQISAQLTRRDGQIFYSVLFENNTQVPLDGFMIQFNKNTFGVAAAGPLQVPVLQPGTSASTLLPMVLFQNVSQGPPSSLLQVAVKNNQQPVWYFNDKMSLHVFFSEDGQMERSNFLETWRSLPDSNEVSKDLPSLVITNVEPTLDRLAASNMFFIAKRKHANQDVFYFSAKIPGGVPFLIELTTVIGTPGVKCAIKTPSTEISPLFFEAVETLLS 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1665217 1676330 + Conep08aG0030400.1 Cone8ag0289 442838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0289 901 Pfam Beta2-adaptin appendage, C-terminal sub-domain 791 900 IPR015151 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cone8ag0289 901 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 3 858 IPR026739 GO:0016192(PANTHER)|GO:0016192(InterPro)
Cone8ag0289 901 Pfam Adaptin N terminal region 14 534 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cone8ag0289 901 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 789 900 IPR009028 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cone8ag0289 901 MobiDBLite consensus disorder prediction 608 638 - -
Cone8ag0289 901 Gene3D - 4 592 IPR011989 -
Cone8ag0289 901 SMART alpha_adaptinc2 667 781 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone8ag0289 901 SUPERFAMILY ARM repeat 8 581 IPR016024 -
Cone8ag0289 901 FunFam Beta-adaptin-like protein 786 901 - -
Cone8ag0289 901 SMART B2_adapt_app_C_2 790 901 IPR015151 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030131(InterPro)
Cone8ag0289 901 PIRSF Beta_adaptin 1 732 IPR016342 GO:0015031(InterPro)|GO:0030276(InterPro)
Cone8ag0289 901 Gene3D - 786 901 IPR012295 -
Cone8ag0289 901 MobiDBLite consensus disorder prediction 608 649 - -
Cone8ag0289 901 FunFam Beta-adaptin-like protein C 674 784 - -
Cone8ag0289 901 FunFam AP complex subunit beta 3 592 - -
Cone8ag0289 901 SUPERFAMILY Clathrin adaptor appendage domain 673 787 IPR013041 -
Cone8ag0289 901 Gene3D - 672 784 IPR013037 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone8ag0289 901 Pfam Adaptin C-terminal domain 676 780 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0289 K12392 - - mdm:103454772 1556.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1259 Cone-Chr14:10113145 Cone8ag0289 Cone-Chr8:1665217 4.76E-109 dispersed
Cone15ag1281 Cone-Chr15:10054554 Cone8ag0289 Cone-Chr8:1665217 3.41E-109 dispersed
Cone5ag0262 Cone-Chr5:1113353 Cone8ag0289 Cone-Chr8:1665217 1.54E-32 dispersed
Cone12ag0295 Cone-Chr12:1602814 Cone8ag0289 Cone-Chr8:1665217 0 wgd
Cone6ag0794 Cone-Chr6:4035589 Cone8ag0289 Cone-Chr8:1665217 5.56E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g18 . . . . . . . . . . Cma02g01437 Cma15g01240 Car02g01205 Car15g01117 . . Cpe05g00350 . . . . . . . . . . . . . . Cone8ag0289 Cone12ag0295 Cone6ag0794 . . Csa05g00264 Chy09g01244 . . Blo19g00330 . . . . . . . Cmo02g01471 Cmo15g01305 . . . . . Cpe13g00145 Bhi12g00287 . . Lac11g2070 Hepe06g1527 . Lcy12g1632 Cla01g00248 Cam01g0252 Cec01g0245 Cco01g0258 Clacu01g0250 Cmu01g0240 Cre09g2268 Lsi09g00238 . . Cme09g01779
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002730 1 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 1 57