Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0296 ATGGAGGGTAAGGAAGAAGACGTGAAGCTCGGGGCTAATAAGTTCCCAGAGAGGCAACCCATCGGAACGGCAGCTCAGACCGACGTGGACAAAGACTACAAGGAGGTCCCGCCAGCGCCGCTCTTTGAGCCGGGAGAGCTGACGTCATGGTCGTTTTACAGGGCCGGAATAGCAGAGTTCGTGGCCACTTTCTTGTTTTTGTACATCACTGTCTTGACTGTGATGGGTGTGAACAGGGCTCCGTCGAAATGTGCTTCTGTGGGTGTTCAAGGGATCGCTTGGGCTTTTGGGGGCATGATCTTTGCTCTTGTTTACTGCACTGCTGGTATCTCTGGAGGACACATAAACCCGGCAGTGACCTTCGGTCTGTTTCTTGCAAGAAAGCTGTCTCTAACAAGAGCAATCTTCTACATAATCATGCAAACTCTAGGCGCCATAGTTGGAGCCTGGGTCGTCAAGGGCTTTGAGAAGTCCTACTACGAACAAAAACTAGGCGGTGCTAACTTTGTAGCCCATGGCTACACAAAAGGCGACGGCCTCGGAGCTGAAATTATTGGAACCTTTGTACTCGTCTACACCGTTTTCTCTGCCACCGATGCCAAAAGAAGCGCTCGTGACTCTCATGTCCCTATTTTAGCTCCACTTCCGATTGGGTTTGCAGTGTTCTTGGTTCACTTGGCCACCATTCCCATCACGGGAACCGGCATCAACCCTGCAAGGAGTCTTGGAGCTGCGATCATCTACGACAGAGACCACGCTTGGGACGACCAATGGATCTTCTGGGTGGGACCCTTCATCGGAGCTGCCCTTGCTGCTGCTTACCACCAGCTGATCATCAGGGCTATTCCTTTCAAATCCAGGGCATAA 867 51.9 MEGKEEDVKLGANKFPERQPIGTAAQTDVDKDYKEVPPAPLFEPGELTSWSFYRAGIAEFVATFLFLYITVLTVMGVNRAPSKCASVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQTLGAIVGAWVVKGFEKSYYEQKLGGANFVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDRDHAWDDQWIFWVGPFIGAALAAAYHQLIIRAIPFKSRA 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1713588 1717952 - Conep08aG0031100.1 Cone8ag0296 442845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0296 288 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 286 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cone8ag0296 288 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Cone8ag0296 288 NCBIfam MIP family channel protein 58 274 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 SUPERFAMILY Aquaporin-like 46 280 IPR023271 -
Cone8ag0296 288 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Cone8ag0296 288 CDD MIP 54 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0296 288 FunFam Probable aquaporin PIP1-2 39 288 - -
Cone8ag0296 288 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0296 Cone-Chr8:1713588 Cone8ag1291 Cone-Chr8:10585800 3.60E-134 dispersed
Cone6ag0785 Cone-Chr6:4000558 Cone8ag0296 Cone-Chr8:1713588 1.15E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0296 K09872 - gmx:100780356 518.079