Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0303 ATGGTTGGTGGCCATAAAAATCCGCCTAGAAATGGTCAGCCTTCAATCAAATACAGATTGAACCCAGATTCACGGGTGTCCTTTGAGCTGGCAGATTTTGCGCATGGCGGGTATGCCCCTAACCTTTCTGATGATAACAGAAGGCAATGCAGTGAAAAATGTGAACCCAATCCTCCCAATGTATTGAGCACTTCTCAGCTCATCTCGGTGATTGGTGAAATGTGGGATTCAGCTAGTCGTCCTCTTGGTTTTTTCCAACCCAAGACTGGTTCAAATCCAGATGGCAATATCTCTGAGAAGAAGGAGGTTATCCTTAGTATTCCAGATGCAGAAGCAAAATGTAGGATACCCAGTCCTGATGGAAGAAATACTAACTTGTGTACTGATTCAGTGAAGGCTAGTCACTTTTCTTCAAACCTACAGCCAAATGTGAATTTTGTAACTGTAGCCCAGAGGTTGTCTGTATCAAGACATTCTAGTAATACTTTTAATGAATTTTGGAAGGGAAAGGGTCTTGCAAGTGTTGGAATCTCGTTTGATTTAGGATACCTGTATGGTTGGATGAATGGAATACTCTATGGTGGATTAGATTCTCCAGTCAAAGCAACCAAGATTGAGAGCTCTAAAAGTGATGAATGTGGAGATACAGTTTGTCATACAAATACATTGACTACTGAGAGTGTGGAATTTGAGATGGACAAAAAGCGAAACATTTCTTTGGTTTCGGATTTTTTCCTTCCGACTGTTAGAGATATTAAGGCAGATTGTGGTATTTTGAGAACTTCACATTCATGTCTTCTTGAAGACTATTATTTGACCCCCTTCTTACCTTCCCACAACAGTGAATTTGACAAATATTCAACTAAGACTGATGGTAATAATGACCTGTTTGAGAGAAAAAGTAACCACGACAAGTCCATTTTTGAAGAGGAATGCAATGCTGAGGGGAGCTCATTTATCTATGAAAAGCCTCATTTTTCTCTTGCTAAGCAAGAACATGCCATTGCTGGTGCATTAGCTGGTGTATTTGTGAGTCTTTGTCTACACCCAGTTGATACAATCAAAACAGTGGTTCAATCTTGCTATCCACATCAGAGATCTTTGTGTTACATTGGAAAATCAATAGTCTCCGATCGAGGTTTAACCGGACTTTATCGTGGAATTGCCACCAATCTAGCAACTTCAGCTCCAATATCGGCTGTTTACACTTTCACCTATGAATCGGTTAAGGCAGCTTTGCTCCCTCTTTTCCCAAGGGAGTACTACTCATCTGCACACTGTATAGCAGGTGGTTGTGCAAGTGTGGCTACTTCTTTTATTTTTACCCCAAGCGAGCGTATAAAGCAACATATGCAAGTTAGTTCACACTACCACAACTGCTGGAATGCATTGGCTGGGATTATTACGAAGGGTGGTTTTCGATCGTTATATGCTGGGTGGGGGGCTGTTCTTTGCAGGAATGTTCCCCACTCAATTATAAAGTTCTACACATATGAAAGCCTGAAGGAATTGATGTTGTCATCATCTCAATCTAAAGCTCAACCAAGCCCATTACAAACACTAGTTTGTGGAGGATTAGCAGGATCTACTGCCGCGTTATTTACCACTCCTTTTGATGTGGTCAAAACAAGATTACAGACTCAGATTCCAGGATCTATTAGCCAGTATACTAGTGTGATCCACGCTCTTCAAGAAATAGGCAATACTGAAGGTCTAAAAGGCTTATACAGGGGTCTGACTCCAAGGCTGGTCATGTATATGTCCCAAGGAGCAATCTTCTTTGCATCTTATGAATTTTTCAAGACCCTTTTTTGTCTCAAGGAGCCACAACAGCAAGAAGTCGGAATCCAATGCTAA 1857 41.14 MVGGHKNPPRNGQPSIKYRLNPDSRVSFELADFAHGGYAPNLSDDNRRQCSEKCEPNPPNVLSTSQLISVIGEMWDSASRPLGFFQPKTGSNPDGNISEKKEVILSIPDAEAKCRIPSPDGRNTNLCTDSVKASHFSSNLQPNVNFVTVAQRLSVSRHSSNTFNEFWKGKGLASVGISFDLGYLYGWMNGILYGGLDSPVKATKIESSKSDECGDTVCHTNTLTTESVEFEMDKKRNISLVSDFFLPTVRDIKADCGILRTSHSCLLEDYYLTPFLPSHNSEFDKYSTKTDGNNDLFERKSNHDKSIFEEECNAEGSSFIYEKPHFSLAKQEHAIAGALAGVFVSLCLHPVDTIKTVVQSCYPHQRSLCYIGKSIVSDRGLTGLYRGIATNLATSAPISAVYTFTYESVKAALLPLFPREYYSSAHCIAGGCASVATSFIFTPSERIKQHMQVSSHYHNCWNALAGIITKGGFRSLYAGWGAVLCRNVPHSIIKFYTYESLKELMLSSSQSKAQPSPLQTLVCGGLAGSTAALFTTPFDVVKTRLQTQIPGSISQYTSVIHALQEIGNTEGLKGLYRGLTPRLVMYMSQGAIFFASYEFFKTLFCLKEPQQQEVGIQC 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1751422 1755112 + Conep08aG0031800.1 Cone8ag0303 442852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0303 618 SUPERFAMILY Mitochondrial carrier 332 600 IPR023395 -
Cone8ag0303 618 ProSiteProfiles Solute carrier (Solcar) repeat profile. 515 603 IPR018108 -
Cone8ag0303 618 ProSiteProfiles Solute carrier (Solcar) repeat profile. 421 504 IPR018108 -
Cone8ag0303 618 MobiDBLite consensus disorder prediction 1 20 - -
Cone8ag0303 618 Pfam Mitochondrial carrier protein 332 413 IPR018108 -
Cone8ag0303 618 Pfam Mitochondrial carrier protein 423 507 IPR018108 -
Cone8ag0303 618 Pfam Mitochondrial carrier protein 515 605 IPR018108 -
Cone8ag0303 618 Gene3D Mitochondrial carrier domain 316 422 IPR023395 -
Cone8ag0303 618 Gene3D Mitochondrial carrier domain 423 617 IPR023395 -
Cone8ag0303 618 ProSiteProfiles Solute carrier (Solcar) repeat profile. 328 412 IPR018108 -
Cone8ag0303 618 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 219 609 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Cone8ag0303 618 FunFam Mitochondrial substrate carrier protein-like 454 617 - -
Cone8ag0303 618 MobiDBLite consensus disorder prediction 38 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0303 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0430 Cone-Chr6:2086342 Cone8ag0303 Cone-Chr8:1751422 1.87E-13 dispersed
Cone8ag0303 Cone-Chr8:1751422 Cone9ag0448 Cone-Chr9:2078838 1.67E-12 dispersed
Cone8ag0303 Cone-Chr8:1751422 Cone8ag0066 Cone-Chr8:347083 2.71E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37