Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0305 ATGGGAAATCGGAGATTCACGCAAGTTTCGACAAGCGATGAAGAAGACGAAGTACCTCGTAAGCAGCAGCAGAAGCCACCGAACTTGGAGGAGGAGGAGGAATTGCAGACGCAGAGGAAGAGGAAGAGGATGAAACTTCAGGAGGATGGCGAAGAGGAGCAAGGGGGAGAGAAGAACTGTAAGAGTCAGAAGAGGAGGAGTAACAAGGGAGAGAGTGAGAAAGAAGCGACGCAGCTGAGTGGAAATAATGTCGGCGACGATGATGATGAAGACGAGGACCCCGAGCCTAGTCCGATTGGAGAAGTGGTTAGGGTTTCTGGGAAAGGAAGGGGGCGGAGGAGTCACTATGAGGCGTTCGAGTATGACGGTAATCGATATGAGCTTGAGGATCCAGTTGTTCTAATTCCAGAGGATAAGTCTCAGAAGCCCTATGTAGCAATTATAAAGGATATCACTCAAAAAAGGGATGGAAGCATGATGGTTACTGGGCAGTGGTTTTATCGTCCTGAAGAAGCAGAGAAAAAAGGTGGTGGAAACTGGGAATCAAATGATACAAGAATGTTATTTTATAGTTTCCACCGTGACGAGGTCCCTGCAGAATCTGTGATGCACAAGTGTGTGGTGCATTTTGTTCCCCTAGAGAAGAAGTTGCCGCTCCGTAAAAAGAATCCTGGATTTATTGTGCAGAAAGTGTATGATACTATTGAGAAAAAGCTGTGGAAGCTAACTGACAAAGACTATGAAGACAGTAAACAACATGAAATCGATCTTCTTGTTCAAAAAACTATGTCCCGTTTGGGAGATCTCCCTGACCTTGAGCCTGAAGAGGGGGCTACCACTTTTGAGGATCTGTTAAAGGGTAAAAGAATTTTTAGGAGGAAGACCATTTCACCTATTGATGTTTCAAGGAATGATGAAGCCACAATCCGGTGTGATCAAAATCTACAAGCTGAAACACCAGCAAATACTACATCAGAGTCCTACAATATACTGGTAAAGTTTGATGTACTAACTGGAGAAACCCAACGAGACAAATGGTTGGAAAAGCTTCTGCATGGAATTCAGTACTTATGTTATACTACTGATTCCACACATGGGTATGATAAAGGTAAGAGTACTTCTGAAAACAAGAGCAAGCCTCCAGAAACCACAAATGGATCTCAAGGGAGGAGTTTGAAGAGCTACAAGTCTTTTCTATGGCCGGATGCTGCAGTTCCAGTTATAACTGCTCTTGAGCAGGTCGCCAACGATGCTCTTTCTTCTGATTTTCAGAAGTATAACCAAAAAATGAGGCAACTTGTTTTCAATCTCAAGCAAAGCCCTCTACTAGCACGGCGCCTTCTTAATGGAGAATTGGAGCCTTTGAAAATTCTGAACATGTCACCTAATGAGCTAAAGGAGGGAATAACTGCAGAGGAGACACCTACGGAGGAGCCTGATGATTTAGAGCGAATGCAGATGACAGATGCTCGTTGTTCTCGATGTAATGAGTGTAAAGTAGGTCTGAGGGACATCATCCAAGCTGGACATGGAGAGCGTTATAAGTTGGAGTGTATTGGCTGTGGTCATTCTTGGTACGCATCTCGCGACGAAGTATCTTCACTAACCATAGATACAACCGATGCTACCAAGAACGTAGGGACCGCCCCGTGGGCCACGGCCAAATTTGAAGATGTCGAGAAGCAGCTACTAAGTCCCCGAGAAGCCAACAAATCTGCCACGGACCTTTTCAAGAAGACAAGCGAAGCATACATGCCTGTATTGGAAAAGTCCAAATCATTTAACAAGTCTAGAAAGGAAGATAACCCTTAA 1812 44.54 MGNRRFTQVSTSDEEDEVPRKQQQKPPNLEEEEELQTQRKRKRMKLQEDGEEEQGGEKNCKSQKRRSNKGESEKEATQLSGNNVGDDDDEDEDPEPSPIGEVVRVSGKGRGRRSHYEAFEYDGNRYELEDPVVLIPEDKSQKPYVAIIKDITQKRDGSMMVTGQWFYRPEEAEKKGGGNWESNDTRMLFYSFHRDEVPAESVMHKCVVHFVPLEKKLPLRKKNPGFIVQKVYDTIEKKLWKLTDKDYEDSKQHEIDLLVQKTMSRLGDLPDLEPEEGATTFEDLLKGKRIFRRKTISPIDVSRNDEATIRCDQNLQAETPANTTSESYNILVKFDVLTGETQRDKWLEKLLHGIQYLCYTTDSTHGYDKGKSTSENKSKPPETTNGSQGRSLKSYKSFLWPDAAVPVITALEQVANDALSSDFQKYNQKMRQLVFNLKQSPLLARRLLNGELEPLKILNMSPNELKEGITAEETPTEEPDDLERMQMTDARCSRCNECKVGLRDIIQAGHGERYKLECIGCGHSWYASRDEVSSLTIDTTDATKNVGTAPWATAKFEDVEKQLLSPREANKSATDLFKKTSEAYMPVLEKSKSFNKSRKEDNP 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1759160 1764778 - Conep08aG0032000.1 Cone8ag0305 442854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0305 603 ProSiteProfiles TFIIS central domain profile. 342 493 IPR003618 GO:0006351(InterPro)
Cone8ag0305 603 MobiDBLite consensus disorder prediction 9 73 - -
Cone8ag0305 603 MobiDBLite consensus disorder prediction 377 391 - -
Cone8ag0305 603 CDD BAH_plant_3 106 252 - -
Cone8ag0305 603 MobiDBLite consensus disorder prediction 366 391 - -
Cone8ag0305 603 ProSiteProfiles BAH domain profile. 124 243 IPR001025 GO:0003682(InterPro)
Cone8ag0305 603 SMART mid_6 382 475 IPR003618 GO:0006351(InterPro)
Cone8ag0305 603 Gene3D - 386 467 IPR036575 GO:0006351(InterPro)
Cone8ag0305 603 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 602 - -
Cone8ag0305 603 MobiDBLite consensus disorder prediction 1 111 - -
Cone8ag0305 603 Coils Coil 29 49 - -
Cone8ag0305 603 Pfam Transcription factor S-II (TFIIS), central domain 340 483 IPR003618 GO:0006351(InterPro)
Cone8ag0305 603 Gene3D - 94 260 IPR043151 -
Cone8ag0305 603 Pfam BAH domain 125 242 IPR001025 GO:0003682(InterPro)
Cone8ag0305 603 SUPERFAMILY Elongation factor TFIIS domain 2 400 466 IPR036575 GO:0006351(InterPro)
Cone8ag0305 603 SMART BAH_4 124 243 IPR001025 GO:0003682(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0305 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0303 Cone-Chr12:1653986 Cone8ag0305 Cone-Chr8:1759160 7.16E-73 dispersed
Cone18ag1351 Cone-Chr18:9305791 Cone8ag0305 Cone-Chr8:1759160 1.15E-19 dispersed
Cone19ag0131 Cone-Chr19:713065 Cone8ag0305 Cone-Chr8:1759160 7.70E-19 dispersed
Cone6ag0779 Cone-Chr6:3968003 Cone8ag0305 Cone-Chr8:1759160 3.62E-185 wgd
Cone8ag0305 Cone-Chr8:1759160 Cone9ag0784 Cone-Chr9:3750636 2.33E-217 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006093 0 1 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 4 3 1 1 1 1 1 1 1 1 4 4 1 39