Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0311 ATGGCATTATCTGGTGGGTCAGCTTCATACTATCTCCACAGGGGAGAACCGGGTCAATCGGGCAGCTTTCATTCTCCGCCCAGGTTTAGACCTTCTTCTAATCCTAACCCCAACCCTAACCCAAATCTCGGCATTCTGTCCCATTCAAATGTAAGGGGTAGTGGCTCAGTAGGATCAGCATTTCCCGAGCCATCATCTCATGTTAATTTTGCCCGTGGCATTAGCGTTAGTGAGTTCCCTAGAGGGGGGCCCTCTAGTGAGCCTGTAAAGAGGAAAAGAGGGAGGCCAAGAAAGTATGCACCAGATGGGCAGGTTTCTCTTGGACTCTCTCCTATGTCGGCTAGTTCTAATCAAACTCCGGGTTCTAATCCAAATGCTCCGAAGAAAAACCGAGGCCGGCCTCCTGGAAGTGGAAGGAAACAACAATTGGCTTTGCTTGGTGAATGGATGAACAGTTCAGCCGGACAGGCATTTACGCCACATGTCATTCGAATCCGACCCGGAGAGGATATTGTTGCAAGAATATTATCATTTTCACAACAAAGGCCAAGAGCAGTATGCATTATGTCTGGTAACGGAACGGTTTCTTCCGTAAAATTATGTCAACCAACGTCATCGACTGGAGTCAGTGTCACATATGAGGGGAGATTCCAGATATTGGTCTTGTCTGGTTCGTACTTAGTTGCTGAGGATGGTGGTCCCCAAAACCGAACAGGCGGGGTCAGCGTTTCCCTTTCGAGTCCTGATGGTCATATCTTTGGTGGTGGTGTGGCCATGCTTATTGCATCTGGCCCAGTTCAGGTCGTAGTAAGCAGTTTTGTATATGGAGGCTCAAAGACTAAGGACAAGCAAGCAATTGTCCCGAAAGTCGACAATGAACTGATCACCTTGACTGCTAGCTCTCCTCAACAGGCTACTCAAAACTACACTCATTCTCAGCCTGTGGCTTGGCACGGGGCCCGACCTGTCGATATGAGGAACCCACATCATGGTATTGACTTAATGCGAGGATGA 1014 48.62 MALSGGSASYYLHRGEPGQSGSFHSPPRFRPSSNPNPNPNPNLGILSHSNVRGSGSVGSAFPEPSSHVNFARGISVSEFPRGGPSSEPVKRKRGRPRKYAPDGQVSLGLSPMSASSNQTPGSNPNAPKKNRGRPPGSGRKQQLALLGEWMNSSAGQAFTPHVIRIRPGEDIVARILSFSQQRPRAVCIMSGNGTVSSVKLCQPTSSTGVSVTYEGRFQILVLSGSYLVAEDGGPQNRTGGVSVSLSSPDGHIFGGGVAMLIASGPVQVVVSSFVYGGSKTKDKQAIVPKVDNELITLTASSPQQATQNYTHSQPVAWHGARPVDMRNPHHGIDLMRG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1798718 1801838 + Conep08aG0032600.1 Cone8ag0311 442860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0311 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 304 IPR039605 GO:0003680(InterPro)
Cone8ag0311 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 275 - -
Cone8ag0311 337 Gene3D - 160 290 - -
Cone8ag0311 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Cone8ag0311 337 ProSiteProfiles PPC domain profile profile. 155 293 IPR005175 -
Cone8ag0311 337 SMART AT_hook_2 90 102 IPR017956 GO:0003677(InterPro)
Cone8ag0311 337 SMART AT_hook_2 128 140 IPR017956 GO:0003677(InterPro)
Cone8ag0311 337 MobiDBLite consensus disorder prediction 39 63 - -
Cone8ag0311 337 MobiDBLite consensus disorder prediction 1 140 - -
Cone8ag0311 337 CDD DUF296 159 273 IPR005175 -
Cone8ag0311 337 MobiDBLite consensus disorder prediction 108 126 - -
Cone8ag0311 337 PRINTS AT-hook-like domain signature 90 100 IPR017956 GO:0003677(InterPro)
Cone8ag0311 337 PRINTS AT-hook-like domain signature 126 137 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0311 Cone-Chr8:1798718 Cone8ag0357 Cone-Chr8:2067946 1.07E-57 dispersed
Cone12ag0311 Cone-Chr12:1708357 Cone8ag0311 Cone-Chr8:1798718 3.45E-130 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone8ag0311 Cone-Chr8:1798718 1.50E-65 wgd
Cone15ag0383 Cone-Chr15:1761417 Cone8ag0311 Cone-Chr8:1798718 9.28E-62 wgd
Cone6ag0774 Cone-Chr6:3945485 Cone8ag0311 Cone-Chr8:1798718 4.29E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0311 - - - 0.0