Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0312 ATGCTCAGTTTTCCAGCTCGTTGTCTCTTCAGAAGAAATCTAAGCGTCGCATCTTCATCATCTGCTTCTATTCTTTGGAAAAAGAGAGTCTTACCCAATACCCAGAATACCATTTTGTTTCCTTCTTCGATGATTTCATCGGTTCCTTCATTTTCTTCGTCGATCAAAACAGATCTTTTCAGGCCCGTGCTTAACACTCCTAAATCAAGTCGCAGTATGGCTGCCCAGTCATCTAAGTCATCTTTACATGAATTCACTGTCAAGGATGCAAGGGGGAACGATGTTGATTTGAGCAACTACAAAGGAAAAGTTCTCTTGATTGTCAATGTTGCATCAGAATGTGGCTTGACTAATTCAAATTACACAGAGCTCAATCAACTGTATGAGAAATACAAAAATCAGGGACTTGAGATTCTAGCATTCCCATGCAACCAGTTTGGGGCTCAAGAGCCTGGAAGTAATGACCAGATCGTAGAATTCGCATGTACCCGCTTCAAGGCCGAGTTTCCCATCTTTGACAAGGTGGAAGTGAATGGTGAGAATGCAGCTCCAATTTATAAGTTCTTGAAGACGAGCAAAGGTGGCCTCTTTGGAGATGATATCAAGTGGAATTTTGCAAAGTTTTTGGTGGATAAGGATGGAAATGTTGTCGACCGCTATGCGCCTACAACTTCCCCTCTTAGCATTGAGAAGGATATAAAGAAGTTGTTGGTTGCTTGA 720 41.81 MLSFPARCLFRRNLSVASSSSASILWKKRVLPNTQNTILFPSSMISSVPSFSSSIKTDLFRPVLNTPKSSRSMAAQSSKSSLHEFTVKDARGNDVDLSNYKGKVLLIVNVASECGLTNSNYTELNQLYEKYKNQGLEILAFPCNQFGAQEPGSNDQIVEFACTRFKAEFPIFDKVEVNGENAAPIYKFLKTSKGGLFGDDIKWNFAKFLVDKDGNVVDRYAPTTSPLSIEKDIKKLLVA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1801973 1803937 - Conep08aG0032700.1 Cone8ag0312 442861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0312 239 PRINTS Glutathione peroxidase family signature 136 152 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone8ag0312 239 PRINTS Glutathione peroxidase family signature 100 117 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone8ag0312 239 PRINTS Glutathione peroxidase family signature 201 210 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone8ag0312 239 CDD GSH_Peroxidase 81 233 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone8ag0312 239 SUPERFAMILY Thioredoxin-like 81 237 IPR036249 -
Cone8ag0312 239 ProSitePatterns Glutathione peroxidases signature 2. 139 146 IPR029760 -
Cone8ag0312 239 ProSiteProfiles Thioredoxin domain profile. 76 238 IPR013766 -
Cone8ag0312 239 PANTHER GLUTATHIONE PEROXIDASE 70 237 IPR000889 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Cone8ag0312 239 Gene3D Glutaredoxin 73 238 - -
Cone8ag0312 239 ProSitePatterns Glutathione peroxidases active site. 102 117 IPR029759 -
Cone8ag0312 239 FunFam Glutathione peroxidase 73 239 - -
Cone8ag0312 239 ProSiteProfiles Glutathione peroxidase profile. 72 239 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cone8ag0312 239 Pfam Glutathione peroxidase 82 190 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0312 K00432 - - rcu:8266462 308.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1740 Cone-Chr4:12827825 Cone8ag0312 Cone-Chr8:1801973 2.54E-83 dispersed
Cone7ag1660 Cone-Chr7:11156141 Cone8ag0312 Cone-Chr8:1801973 4.97E-81 dispersed
Cone8ag0312 Cone-Chr8:1801973 Cone9ag0779 Cone-Chr9:3725741 1.15E-87 dispersed
Cone14ag0577 Cone-Chr14:2861607 Cone8ag0312 Cone-Chr8:1801973 1.62E-88 transposed
Cone12ag0312 Cone-Chr12:1711846 Cone8ag0312 Cone-Chr8:1801973 2.74E-68 wgd
Cone6ag0772 Cone-Chr6:3937111 Cone8ag0312 Cone-Chr8:1801973 4.18E-106 wgd
Cone8ag0312 Cone-Chr8:1801973 Cone9ag0778 Cone-Chr9:3723899 4.19E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198