Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0313 ATGACTTGCACTTCTTGCTCTTCGATCGTCGAGTCATCTTTGCAGGCAATTAATGGTGTACAAAAAGCACGAGTTGCATTAGCAATTGAAGAAGCCGAAGTATGTTACGATCCGAAAATTGTTAATCGCAATCAACTAGTGAAAGCCATACAAGATTCGGGATTTGAAGCCATACTCGTCACTATTGGAGAAAATATAAGCAAGATAGAGCTTAAAGTTGAAGGCATAGAGTCCGATAATTCGATTCAGATAATGGAAAAATCGCTTGGAGCAATGGTAGGGATTCAAGATATAGAAATAGACATAAAACTAAAAAAAGTTTCGATTTCTTACAAACCGGGTATGACTGGACCGAGAATCTTTATCGAAGTGATCGAGTCAATCAAAACGGAGCATTTCAAAGCAACTTTATATCCCCAAGAAGGAAGAGGAAGTCAACGGCAAAAAGAAATTAAACAATATTATAGATCCTTCATGTGGAGTTTTGTTCTTACCGTTCCGATCTTTTTAACCTCCATGATCTTCATGTATATCCCGAGAATTAATCAAGTGCTAGAGATCAAAGTAGTGAATATGATGAACATTGGAGAGATCATCAGGTGGGAACTATCCACAATCGTGCAATTCTACATTGGTCGAAGATTTTACATCGGTTCTTATAAAGCATTACGAAGCGGGTCAGCCAATATGGACGTTTTGATTGCATTGGGAACAAATGCAGCCTACTTCTATTCCGTCTACTCGGTGTTAAGAGCTGCTACATCTCGGGTTTTTAAGGGTACAGATTTCTTCGAGACTAGTTCCATGCTAATTTCATTTATTCTCCTCGGTAAATATCTAGAGGTTTTAGCTAAGGGAAAGACATCTAATGCCATTGCCAAGCTAATGCATCTTAGTCCCGAAACGGCAACATTGTTGACTTTGGATGATGAGGGGAATGTGATAGGTGAACAAGAAATCGATAGCCGGTTAGTACAAAAGAATGATGTGATTAAGATTGTTCCAGGTGCTAAAGTAGCTTCGGATGGGATCGTTTTATGGGGAGAAAGTCATGTAAATGAGAGCATGATAACTGGAGAAGCACGTCCAGTTGGAAAACAGAAGGGTGATCTAGTGATTGGTGGGACCACGAATGAGAACGGAGTGTTGCGTATTAAGGCGACTAGGGTTGGATCGGAGAGTGCTCTTGCGCAAATTGTTTGGCTGGTTGAATCGGCGCAAATGGCTAAAGCTCCGGTTCAGAAATTCGCCGACCGAATATCCAAATACTTTGTACCAATGGTCATTTCATTTTCATTTCTTACTTGGGTGGCTTGGCTTTTAGCTGGGAGGTTCAATTGTTACCCCAGTTCATGGATACCAACTTCGATGAATAGCTTCGAACTAGCACTCCAATTCGGGATTTCCGTTATGGTAATAGCTTGCCCTTGTGCGCTTGGCTTAGCAACTCCAACTGCAGTTATGGTCGGGACTGGAGTTGGTGCGTCACAGGGAGTATTAATCAAAGGCGGCCAAGCTTTAGAATGTGCGCATAAGGTGAATTGCATTGTGTTCGACAAGACCGGAACACTTACTATTGGAAAGCCGACAGTCGTAAGCTCAAAGCCCTTTAAAACTATGATACTTAGAGATCTCCTCGAACTTGTTGCGGCAACGGAGGTGAATAGCGAGCACCCATTAGCAAAGGCCATTGTCGAGTATGCCAAGAAATTAAGAGGAGATCCGAACCCTGTCTGGCCAGAAGCACGCGATTTTATAGCCATTATTGGACATGGAGTGAAGGCCATAGTAAGAAACAAGGAAATACTTGTGGGAAACAAGAGCCTAATGACAGATCACAACATAGTCATTCCGGCAGATGCCGAAAATTTTCTTGTAGATTCTGAAAGTAGAGCTCAAACTGGGATCCTTGTATCAATGGATGGAGAGTTAGTAGGTGCTTTAGCCATATCCGATCCTCTTAAACCAAGTGCACATGAAGTCATTTCCATTCTCAGGTCTATGAAAGTCAGGAGCATCATGGTGACAGGCGACAATTGGGGTACTGCAAATTCCATTGCCCGAGAAGTCGGTATAGAAACAGTTATAGCTGAGGCGAAACCCGAACACAAAGCCGAGAAAGTAAAGGCATTGCAGGCTTCAGGCTATATAGTAGCAATGGTGGGAGATGGCATCAATGACTCACCGGCATTAGTATCGGCCAATGTCGGGATAGCAATAGGAGCTGGGACCGACATAGCAATTGAGGCGGCGAGCATCGTTCTAATGAAAAGCGATCTAGAGGATGTGATAACGGCCATTGATCTTTCTAGAAAAACATTTTCTCGTATCCGTTTGAACTACATTTGGGCTTTAGGTTATAATCTCCTAGGCATTCCAATAGCTGCCGGAGTACTTTTCCCTTCAACGAGATTCCGGTTACCCCCATGGATTGCCGGAGCTGCAATGGCAGCTTCTTCTGTTAGTGTTGTTTGCTCTTCTTTGATGTTGAAGAACTATAAGAGACCAAAGAAGCTTGACAACCTTAAGATGAATGGAACAGTTGTAATTGAATAA 2556 42.53 MTCTSCSSIVESSLQAINGVQKARVALAIEEAEVCYDPKIVNRNQLVKAIQDSGFEAILVTIGENISKIELKVEGIESDNSIQIMEKSLGAMVGIQDIEIDIKLKKVSISYKPGMTGPRIFIEVIESIKTEHFKATLYPQEGRGSQRQKEIKQYYRSFMWSFVLTVPIFLTSMIFMYIPRINQVLEIKVVNMMNIGEIIRWELSTIVQFYIGRRFYIGSYKALRSGSANMDVLIALGTNAAYFYSVYSVLRAATSRVFKGTDFFETSSMLISFILLGKYLEVLAKGKTSNAIAKLMHLSPETATLLTLDDEGNVIGEQEIDSRLVQKNDVIKIVPGAKVASDGIVLWGESHVNESMITGEARPVGKQKGDLVIGGTTNENGVLRIKATRVGSESALAQIVWLVESAQMAKAPVQKFADRISKYFVPMVISFSFLTWVAWLLAGRFNCYPSSWIPTSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALECAHKVNCIVFDKTGTLTIGKPTVVSSKPFKTMILRDLLELVAATEVNSEHPLAKAIVEYAKKLRGDPNPVWPEARDFIAIIGHGVKAIVRNKEILVGNKSLMTDHNIVIPADAENFLVDSESRAQTGILVSMDGELVGALAISDPLKPSAHEVISILRSMKVRSIMVTGDNWGTANSIAREVGIETVIAEAKPEHKAEKVKALQASGYIVAMVGDGINDSPALVSANVGIAIGAGTDIAIEAASIVLMKSDLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKNYKRPKKLDNLKMNGTVVIE 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1804426 1807444 - Conep08aG0032800.1 Cone8ag0313 442862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0313 851 Pfam E1-E2 ATPase 298 495 - -
Cone8ag0313 851 FunFam Probable copper-transporting ATPase HMA5 629 778 - -
Cone8ag0313 851 PRINTS P-type cation-transporting ATPase superfamily signature 353 367 - -
Cone8ag0313 851 PRINTS P-type cation-transporting ATPase superfamily signature 744 756 - -
Cone8ag0313 851 PRINTS P-type cation-transporting ATPase superfamily signature 517 531 - -
Cone8ag0313 851 PRINTS P-type cation-transporting ATPase superfamily signature 646 657 - -
Cone8ag0313 851 PRINTS P-type cation-transporting ATPase superfamily signature 668 678 - -
Cone8ag0313 851 PRINTS P-type cation-transporting ATPase superfamily signature 721 740 - -
Cone8ag0313 851 NCBIfam HAD-IC family P-type ATPase 270 803 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone8ag0313 851 FunFam Copper-exporting P-type ATPase 601 652 - -
Cone8ag0313 851 Gene3D - 285 407 - -
Cone8ag0313 851 Pfam haloacid dehalogenase-like hydrolase 514 734 - -
Cone8ag0313 851 CDD P-type_ATPase_Cu-like 156 817 - -
Cone8ag0313 851 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872(InterPro)
Cone8ag0313 851 ProSiteProfiles Heavy-metal-associated domain profile. 67 133 IPR006121 GO:0046872(InterPro)
Cone8ag0313 851 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 846 - -
Cone8ag0313 851 SFLD Haloacid Dehalogenase 499 773 - -
Cone8ag0313 851 CDD HMA 1 57 IPR006121 GO:0046872(InterPro)
Cone8ag0313 851 Gene3D - 68 137 - -
Cone8ag0313 851 SUPERFAMILY HAD-like 516 827 IPR036412 -
Cone8ag0313 851 SUPERFAMILY HMA, heavy metal-associated domain 1 62 IPR036163 GO:0046872(InterPro)
Cone8ag0313 851 SUPERFAMILY HMA, heavy metal-associated domain 62 131 IPR036163 GO:0046872(InterPro)
Cone8ag0313 851 Gene3D - 1 59 - -
Cone8ag0313 851 SFLD p-type atpase 499 773 IPR044492 -
Cone8ag0313 851 Pfam Heavy-metal-associated domain 1 56 IPR006121 GO:0046872(InterPro)
Cone8ag0313 851 SUPERFAMILY Calcium ATPase, transmembrane domain M 266 789 IPR023298 -
Cone8ag0313 851 Gene3D - 484 778 IPR023214 -
Cone8ag0313 851 FunFam ATPase copper transporting beta 1 61 - -
Cone8ag0313 851 SUPERFAMILY Calcium ATPase, transduction domain A 317 403 IPR008250 -
Cone8ag0313 851 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Cone8ag0313 851 PRINTS Copper-transporting ATPase 1 signature 213 238 - -
Cone8ag0313 851 PRINTS Copper-transporting ATPase 1 signature 158 179 - -
Cone8ag0313 851 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Cone8ag0313 851 NCBIfam heavy metal translocating P-type ATPase 230 830 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone8ag0313 851 FunFam Copper-transporting ATPase 1, putative 285 407 - -
Cone8ag0313 851 Gene3D - 601 652 IPR023299 GO:0000166(InterPro)
Cone8ag0313 851 Gene3D - 524 600 IPR023299 GO:0000166(InterPro)
Cone8ag0313 851 ProSitePatterns E1-E2 ATPases phosphorylation site. 519 525 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0683 Cone-Chr2:32188891 Cone8ag0313 Cone-Chr8:1804426 2.98E-67 dispersed
Cone6ag0759 Cone-Chr6:3867984 Cone8ag0313 Cone-Chr8:1804426 0 dispersed
Cone12ag0313 Cone-Chr12:1713702 Cone8ag0313 Cone-Chr8:1804426 0 wgd
Cone8ag0313 Cone-Chr8:1804426 Cone9ag0775 Cone-Chr9:3710036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0313 K17686 - vvi:100259857 1285.01