Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0315 ATGAGAAACCCATTTGGTTCGTTTCACGTTCTTCTTTGGTTAGTAATTGTTGGGCTGCTGTTTGTTTCTTGTGATTCTTTCCCATCAGATGAAGTGTTGGCTCTTGCTGCATTCAAGGAAGAAATATATGAAGACCCTTTTCTACTCTTCTCCAACTGGAATATTCTCGACGGAGATCCATGCAACTGGTCCGGCATTTCATGCTCGTCGAACCGACAACACATTACAAAACTTGATATATCAGGTGCAAATTTAAGAGGATTTCTTGTTCCAGAATTGGGCAAACTTACTTACTTGAAAGAGCTAGTTTTGTATAGGAACAATCTAATTGGTATAATACCGAAGGAGCTCGGCATGTTAAAGAAACTCACAGTCTTAGATTTGGGAGCTAATAAACTCTCCGGGCGGATTCCTTCGGAGATTGTAAATTTAGCCAACATAGTGAAAATAAATCTTCAGTCTAATATGTTGAGTGGAACCCTACCTCCCAAGCTTGGAAATCTAAAATACCTTGAAGAGCTTCGGTTGGATAGAAATAAGCTTCAAGGAACTGTTCCGGGCTGTGAAAATCCATATTTGACTAATAATACTCATTCAATTCATCGTTGGAGTATGAACTTAACTGGATTTTGTCGACCCACTCGGCTAAAAGTTGCTGATTTTTCATACAATTTTTTTGTTGGAAGCATTCCCAAGTGCTTAAGATATCTTCCAAGATCGAGTTTTCAAAGAAACTGCCTCAAAACTGACGATCCAAAACAACGCTCTATGGCGCAATGCAGCTTTCTCCGAGCCCCACCAGCTAAAATCCATTCAGAAGGTGGTCACATCATTAAGAATCGATCAGATGAATCCAAGCATGGATTGAATTTGAAACCGGCATGGGTTCTGGGTCTTGAAATAGTAACCGGAACCATGATTGGTTCTATCTTCTTGGTTGCTGTTTTCACAACTATCCAGAAATGCAATAAGAAATCCTCTGTCATTGTCCCTTGGAAGAAATTTGGAAGCCGAAAAGACCAAGACACGATTTATATAGATTATGAGATATTGAAGGATGTGAGGAGATATAGTAGACAAGAGCTTGAATTAGCCTGTGAAGAATTCAGCAACATAATAGGCTCTTCTCCAGACAGTTTGGTCTACAAGGGCAACATTAAAGGTGGCCCCGAGATTGCTGTTATCTCGTTGTGCGTCAAGGAAGAGCACTGGGCTCACCATCTCGAACTCTATTTCCAGGGAGAGGTGGCGGATTTGGTGAGATTGGATCACGAGAATTTGGGGAAATTATTAGGATATTGTAGTGAGAATGAGCCGTTTACGAGAATGCTGGTTTCTGAATATGCTCCGAACGGCACATTATTTGAACACCTGCATTATGGAGAAGAAGGATGTCAGTTATCATGGACGCGTCGTATGAGAATCATTATCGGGATTGCTCGGGGCCTTGCTTACCTTCACACTGAACTTCAACCGCCATTTACGATATCAGAGTTGAATTCAGGTTCCATATACCTCACAGATGATTTTACTCCAAAGTTGGTTGAATTTGATAATTGGAAGACCATTCTTTCGAGATCGGCTAAGAACTCAGGATGTATAGGTGGACATGTTGGTGCTAACCGCATTCTTCCAAATTCTCTTGAATCTCGGGATGTTGATATAAGAGGTAACATTTACGCTTTTGGGGTCATTTGTCTGGAAATCATCAGTGGGAGACCTCCATATTGCAAGGACAAAGGTTGCTTGGTCGATTGGGCGGAGGAGTATCTCAAAATGCCAGAGGTGATAAGCAATGTGGTTGATCCGGAACTGAAGCATTTTGGATACGAGGATCTGAAAGTGATATGTGAGGTGGTGAGTCTTTGCTTGTGTGAAGATTCTGCTGAGATTCCGTCTATGAGGGAATTACGCGACGTGTTAGAGAGGAAAATCGATACGTCGGTTTCGGTTGAGATTACAGGATCCTCTTTAGCATGGGCACAGCAGCTTGTTCTCTCCTCCTAG 2007 41.8 MRNPFGSFHVLLWLVIVGLLFVSCDSFPSDEVLALAAFKEEIYEDPFLLFSNWNILDGDPCNWSGISCSSNRQHITKLDISGANLRGFLVPELGKLTYLKELVLYRNNLIGIIPKELGMLKKLTVLDLGANKLSGRIPSEIVNLANIVKINLQSNMLSGTLPPKLGNLKYLEELRLDRNKLQGTVPGCENPYLTNNTHSIHRWSMNLTGFCRPTRLKVADFSYNFFVGSIPKCLRYLPRSSFQRNCLKTDDPKQRSMAQCSFLRAPPAKIHSEGGHIIKNRSDESKHGLNLKPAWVLGLEIVTGTMIGSIFLVAVFTTIQKCNKKSSVIVPWKKFGSRKDQDTIYIDYEILKDVRRYSRQELELACEEFSNIIGSSPDSLVYKGNIKGGPEIAVISLCVKEEHWAHHLELYFQGEVADLVRLDHENLGKLLGYCSENEPFTRMLVSEYAPNGTLFEHLHYGEEGCQLSWTRRMRIIIGIARGLAYLHTELQPPFTISELNSGSIYLTDDFTPKLVEFDNWKTILSRSAKNSGCIGGHVGANRILPNSLESRDVDIRGNIYAFGVICLEIISGRPPYCKDKGCLVDWAEEYLKMPEVISNVVDPELKHFGYEDLKVICEVVSLCLCEDSAEIPSMRELRDVLERKIDTSVSVEITGSSLAWAQQLVLSS 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1820271 1824122 - Conep08aG0033000.1 Cone8ag0315 442864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0315 668 Gene3D Ribonuclease Inhibitor 144 265 IPR032675 -
Cone8ag0315 668 Pfam Protein tyrosine and serine/threonine kinase 370 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag0315 668 FunFam Leucine-rich repeat receptor-like protein kinase 28 187 - -
Cone8ag0315 668 FunFam Inactive receptor-like serine/threonine-protein kinase 342 448 - -
Cone8ag0315 668 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cone8ag0315 668 Gene3D Ribonuclease Inhibitor 30 143 IPR032675 -
Cone8ag0315 668 PANTHER PROTEIN MALE DISCOVERER 2 8 666 - -
Cone8ag0315 668 Gene3D Transferase(Phosphotransferase) domain 1 449 655 - -
Cone8ag0315 668 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
Cone8ag0315 668 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Cone8ag0315 668 Pfam Leucine Rich Repeat 99 119 IPR001611 GO:0005515(InterPro)
Cone8ag0315 668 SUPERFAMILY Protein kinase-like (PK-like) 348 642 IPR011009 -
Cone8ag0315 668 Gene3D Phosphorylase Kinase; domain 1 340 448 - -
Cone8ag0315 668 SUPERFAMILY L domain-like 29 238 - -
Cone8ag0315 668 ProSiteProfiles Protein kinase domain profile. 367 645 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0315 668 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0315 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0764 Cone-Chr6:3891222 Cone8ag0315 Cone-Chr8:1820271 8.56E-254 dispersed
Cone8ag0315 Cone-Chr8:1820271 Cone9ag0962 Cone-Chr9:4811402 5.93E-81 dispersed
Cone8ag0315 Cone-Chr8:1820271 Cone9ag0768 Cone-Chr9:3680827 1.14E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83105 PF03859 CG-1 6.80E-48 No_clan Cone PK