Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0325 ATGGCGTCGTCATCTGCTCCACCTTCAGGGGCCGGAGGCGGCGGAAACAGCAGCTGCGGCTATGATATTCCTTGGGTTGAGAAGTACCGGCCGAGCAAGGTTGCCGACATAATGGGCAACGAAGACGCCGTCTCCAGGCTCCAAGTCATTGCTCGCGACGGAAACATGCCTAATCTCATCTTATCTGTTCCTTTTGTTCCGGAAGGTCTTGAAGCAATCATTTTCACAGCAGATGGTGGTATGAGGCAGGCTTTGAATAACTTGCAAGCTACTTTCAGTGGATTCCGGTTTGTAAACCAAGACAATGTCTTCAAGGTCTGCGACCAACCTCATCCATTGCATGTAAAGAATATGGTCCGTAATGTTCTGGAGGGGAAATTCGATGATGCTTGTTCAGGTCTCAAGCAATTATACGACTTGGGTTATTCTCCCTCAGATATAATCACTACCCTTTTCCGTATCATCAAAAACTACGACATGGCTGAGTATCTGAAACTGGAGTTCATGAAGGAAACGGGTTTTGCTCATATGAGAATCTGTGATGGTGTTCGCTCCTATCTTCAGCTTTGTGGTCTTCTTGCAAAGCTTTGTGTAGTTAGGGAAACTGCTAAAGCAGCATGA 621 46.7 MASSSAPPSGAGGGGNSSCGYDIPWVEKYRPSKVADIMGNEDAVSRLQVIARDGNMPNLILSVPFVPEGLEAIIFTADGGMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACSGLKQLYDLGYSPSDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVRSYLQLCGLLAKLCVVRETAKAA 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1872391 1873598 + Conep08aG0034000.1 Cone8ag0325 442874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0325 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 61 IPR027417 -
Cone8ag0325 206 FunFam Replication factor C subunit 4 40 109 - -
Cone8ag0325 206 CDD HLD_clamp_RFC 41 107 IPR047854 -
Cone8ag0325 206 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 24 62 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone8ag0325 206 Pfam Replication factor C C-terminal domain 110 195 IPR013748 -
Cone8ag0325 206 Gene3D - 40 109 - -
Cone8ag0325 206 Gene3D - 110 202 - -
Cone8ag0325 206 FunFam replication factor C subunit 2 110 202 - -
Cone8ag0325 206 SUPERFAMILY post-AAA+ oligomerization domain-like 109 201 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0326 Cone-Chr12:1778705 Cone8ag0325 Cone-Chr8:1872391 9.41E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0325 K10755 - vvi:100246202 279.256