Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0332 ATGAAGAACGAAGATCAAGTTAGGTCTCTGTTTGGGATCTCTCTTTCGAATCGACCTAAATGGCAGCAATTCCTCATCTGCTCCTCTGGATTCTTCTTCGGCTACCTCGTTAATGGTGTTTGCGAGGAATATGTGTATAATCGGCTCCAATTCAGTTATGGGTGGTATTTCACCTTCATTCAAGGGTTTGTGTACTTGTCCCTGATATATTTGCAAGGCTTCACTACAAAGCAAATGGTGAATCCATGGAGGACTTATGTTAAACTGGCAGGTGTTCTTATGGGTTCTCATGGATTAACCAAAGGGTCCTTGGCCTTCCTTAACTACCCTGCTCAAATCATGTTCAAATCCACCAAGGTTCTTCCTGTAATGGTGATGGGAGCCTTCATTCCAGGGCTGAGAAGGAAATACCCACTCCATGAATACATATCTGCAATTCTATTAGTTCTTGGTCTAATTCTCTTCACCTTAGCAGATGCTTCTACTTCACCAAATTTCAGCATATATGGTGTCTTAATGATAAGTGGTGCTTTAGTAATGGATGCCTTTCTGGGTAATTTGCAAGAAGCAATTTTCACAATGAATCCTGATACTTCACAGACGGAGATGCTTTTCTGCTCAACAGTAGTTGGATTGCCTTTCCTAGCACTACCTATGGTGTTAACTGGAGAGCTTTTTAGAGCTTGGAATTCTTGTTCCGAGCATCCTTATGTGTATGGGGTGTTAGTTTTTGAAGCCATGTCCACATATGTTGGGCAAGTATCTGTTCTGTCACTCATCGCCATTTTTGGAGCTGCCACCACTGCCATGATAACAACAGCTAGAAAGGGGGTAACGTTGTTGCTTTCATACTTGATATTCACAAAGCCATTGACTGAACAGCATGGAACTGGGCTGTTACTTATAGCCTTGGGAATCATGTTGAAGATGTTCCCAGACAACAAACTGCCTTCTAGAAATCCTCCTGGCCACGAAAAATCCTCGTACAAGCTCGTCACTCATGAGAATGAAGTTGTTGAAGATGTTGAGAAGCGGCCATTGATATGA 1047 42.41 MKNEDQVRSLFGISLSNRPKWQQFLICSSGFFFGYLVNGVCEEYVYNRLQFSYGWYFTFIQGFVYLSLIYLQGFTTKQMVNPWRTYVKLAGVLMGSHGLTKGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPLHEYISAILLVLGLILFTLADASTSPNFSIYGVLMISGALVMDAFLGNLQEAIFTMNPDTSQTEMLFCSTVVGLPFLALPMVLTGELFRAWNSCSEHPYVYGVLVFEAMSTYVGQVSVLSLIAIFGAATTAMITTARKGVTLLLSYLIFTKPLTEQHGTGLLLIALGIMLKMFPDNKLPSRNPPGHEKSSYKLVTHENEVVEDVEKRPLI 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1908055 1910097 + Conep08aG0034700.1 Cone8ag0332 442881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0332 348 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 10 320 IPR013657 GO:0022857(PANTHER)|GO:0030173(PANTHER)|GO:0030176(PANTHER)|GO:0055085(InterPro)
Cone8ag0332 348 Pfam UAA transporter family 23 310 IPR013657 GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0332 K15277 - - csv:101204857 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0398 Cone-Chr11:1962558 Cone8ag0332 Cone-Chr8:1908055 5.95E-200 dispersed
Cone18ag1111 Cone-Chr18:8095127 Cone8ag0332 Cone-Chr8:1908055 9.19E-201 dispersed
Cone1ag0668 Cone-Chr1:6282285 Cone8ag0332 Cone-Chr8:1908055 2.69E-14 dispersed
Cone12ag0329 Cone-Chr12:1797638 Cone8ag0332 Cone-Chr8:1908055 2.27E-241 wgd
Cone15ag0352 Cone-Chr15:1642552 Cone8ag0332 Cone-Chr8:1908055 2.45E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g405 . . . . . . . Bma14g00580 Cmo06g01139 . . Cma15g01195 . Car15g01083 . . . . . . . . . . . . . . . . . Cone8ag0332 Cone12ag0329 . . . Csa05g00327 Chy09g01182 . . . Bda07g00499 . . Bpe11g00688 . . . . Cmo15g01259 Cma06g01112 . Car06g00949 . Cpe08g00505 Cpe13g00179 Bhi12g00199 . . . . . Lcy12g1706 . . . . . . . Lsi09g00313 . . Cme09g01715
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001533 3 4 2 2 2 2 3 2 1 2 1 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 6 2 2 72