Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0343 ATGGCACCAACAACAACACTAGCTGCATCAAGAGTTGAGAACTTGGCGACAAGTGGGGTTCAAACGATCCCGAAAGAGTATGTGAGGCCAAAAGAAGAGCTCGAGAGCCTCGTTGAAGACATTTTCGAAGATGAGAGGAAAACCGAGGGGCCTCAAGTCCCAACAATTGATTTGAAAAACATGGATTCGGACGATGAGAAACTTAAGGAGAAATGCAGAGAGGAGGTGAAGAAGGCTGCCATGGAATGGGGGGTGATGAGCTTTATCAACCATGGGATCGACGAAGAGGTGATTAATAGTTTGAGGGAAGCCGGTAGGCTGTTCTTCGAGCTTCCGGTCGAGGAGAAGGAGAAGTATGCAAATGACCAAGAAAGTGGAAAGATTCAAGGGTATGGAAGTAAGTTGGCTAACAATGCTAGTGGCCAACTCGAATGGGAGGACTATTTTTTCCATCTTGTTTATCCAGAGAATAAAAGGGATATGTCTATTTGGCCTAAGACACCAAGCAATTACACGGAGGTGACAAGCGAGTATGCAAGGCAATTGAGAGGATTAGTGACCAAGATACTGTCCATACTATCCCTTGGCTTAGGGTTAGAAGAAGATAGACTAGAAAAAGAAGTTGGAGGCCTAGAAGAGCTCCTACTTCAAATGAAAATCAACTACTACCCAAAATGCCCTCAGCCAGAACTAGCTCTAGGTGTTGAAGCTCACACCGATGTAAGTGCCCTCACCTTCCTTCTCCACAACATGGTGCCTGGCCTCCAGCTTTTCTACAAGGGCAAATGGGTCACTGCCAAATGTGTTCGGAACTCCATCTTCATGCATATTGGTGATACAGTTGAGATACTGAGCAATGGGAAGTATAAGAGCATTCTTCATAGGGGACTTGTTAATAAGGAGAAAGTTAGGATCTCATGGGCTGCCTTTTGTGAGCCACCTAAGGAGAAGATCATTCTTAAGCCGCTTCCTGAGGTGGTTTCCGAGGCTGAGCCGCCAGTCTTCACACCCCGTACTTTTGCTCAGCATGTTCAACATAAGTTGTTTAAGAAGAGCCAGGAGTCCCTGCAGCATGCGCAGCTGATTATTTGA 1092 45.97 MAPTTTLAASRVENLATSGVQTIPKEYVRPKEELESLVEDIFEDERKTEGPQVPTIDLKNMDSDDEKLKEKCREEVKKAAMEWGVMSFINHGIDEEVINSLREAGRLFFELPVEEKEKYANDQESGKIQGYGSKLANNASGQLEWEDYFFHLVYPENKRDMSIWPKTPSNYTEVTSEYARQLRGLVTKILSILSLGLGLEEDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFLLHNMVPGLQLFYKGKWVTAKCVRNSIFMHIGDTVEILSNGKYKSILHRGLVNKEKVRISWAAFCEPPKEKIILKPLPEVVSEAEPPVFTPRTFAQHVQHKLFKKSQESLQHAQLII 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1961632 1962948 + Conep08aG0035900.1 Cone8ag0343 442892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0343 363 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 24 344 IPR050295 -
Cone8ag0343 363 Gene3D - 7 356 IPR027443 -
Cone8ag0343 363 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 214 313 IPR005123 -
Cone8ag0343 363 FunFam Flavonol synthase 7 351 - -
Cone8ag0343 363 Pfam 2OG-Fe(II) oxygenase superfamily 218 313 IPR044861 -
Cone8ag0343 363 SUPERFAMILY Clavaminate synthase-like 10 351 - -
Cone8ag0343 363 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 166 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0343 K05277 - - vvi:100233142 556.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0337 Cone-Chr12:1847283 Cone8ag0343 Cone-Chr8:1961632 5.18E-47 dispersed
Cone4ag1383 Cone-Chr4:11196098 Cone8ag0343 Cone-Chr8:1961632 7.42E-71 dispersed
Cone5ag0197 Cone-Chr5:819180 Cone8ag0343 Cone-Chr8:1961632 1.18E-79 dispersed
Cone7ag1548 Cone-Chr7:10666698 Cone8ag0343 Cone-Chr8:1961632 8.63E-91 dispersed
Cone8ag0343 Cone-Chr8:1961632 Cone8ag0850 Cone-Chr8:8461689 9.80E-51 dispersed
Cone1ag1118 Cone-Chr1:55545965 Cone8ag0343 Cone-Chr8:1961632 6.40E-38 wgd
Cone12ag0336 Cone-Chr12:1845101 Cone8ag0343 Cone-Chr8:1961632 3.00E-41 wgd
Cone14ag0128 Cone-Chr14:591608 Cone8ag0343 Cone-Chr8:1961632 2.21E-38 wgd
Cone15ag0135 Cone-Chr15:630026 Cone8ag0343 Cone-Chr8:1961632 4.95E-38 wgd
Cone15ag0343 Cone-Chr15:1592218 Cone8ag0343 Cone-Chr8:1961632 1.79E-35 wgd
Cone5ag0827 Cone-Chr5:3548300 Cone8ag0343 Cone-Chr8:1961632 7.58E-40 wgd
Cone8ag0343 Cone-Chr8:1961632 Cone9ag0737 Cone-Chr9:3510433 8.42E-198 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g429 Blo02g01083 . . Bda08g00547 . . . . . Cmo16g00543 . . . . . . . . . . . . . . . . . . . . . Cone8ag0343 . . Cone9ag0737 . . . . . . . . . . . . . . . . Cma16g00499 . Car16g01149 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015062 2 0 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 13