Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0353 ATGGATCATTCCCATTCTCTTCCACCTCCATTTCACACAAGAGATTACCATCTACAACATCAATTCGGCCACCATCAACAACAACAAAATTCCGAGGAAGAGCAAAGCGGTAGTAGTGGCCTAAGCCGGGCCCAGAAACGTGAAAGAGATGACAACACCAACGGCAGCGATCATCATCATCAAGGCGGTAATGATCTCCCTGGTAAGTCTGGGGAAGGAGAAAGCACGAGAAGGCCTCGTGGTAGGCCTGCTGGATCCAAGAACAAGCCCAAACCACCCATCATCATCACGCGCGATAGTGCAAACGCCCTCCGAACCCACGTGATTGAAGTCACTGATGGGTGTGATATCGTCGAATGTGTGGCCACTTTTGCCAGGCGGCGACAAAGAGGAGTCTGCATTATGAGCGGGACCGGAACGGTTACCAACGTGACATTAAGACAACCGGCATCACCAGGAGCAATAGTGACATTACATGGCCGGTTCGAGATCCTATCCCTAGCAGGGTCATTTTTACCACCTCCAGCTCCGCCAGCAGCAACAGGGTTGACCATATATCTGGCTGGGGGACAAGGCCAGGTGGTGGGAGGGAGCGTAGTTGGGATGTTGATGGCATCAGGACCCGTGGTGATTATGGCGGCATCATTCAGTAATGCTGCTTACGAGCGGCTTCCTTTGGAGGATGATGAGGGTCAAGGGCTAGCAATGCAAGGTGGTGGCTCAATTGGATCACCTAGTGGTGGTGGTGGTGGAGGAGCTGGTGGCCAACAACAACAAACACCACAACAACTTTTAGGGGATGCAAGTGGGCCAGTGTATCATGGAATGCCTCAAAATCTACTCAACTCAATTCAAATGCCAAATGAGGCAGCTTATTGGGCTACAGGTCGGCCTCCATACTGA 903 51.72 MDHSHSLPPPFHTRDYHLQHQFGHHQQQQNSEEEQSGSSGLSRAQKRERDDNTNGSDHHHQGGNDLPGKSGEGESTRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVECVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAGSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGMLMASGPVVIMAASFSNAAYERLPLEDDEGQGLAMQGGGSIGSPSGGGGGGAGGQQQQTPQQLLGDASGPVYHGMPQNLLNSIQMPNEAAYWATGRPPY 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2019529 2020431 - Conep08aG0036900.1 Cone8ag0353 442902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0353 300 MobiDBLite consensus disorder prediction 230 272 - -
Cone8ag0353 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 217 IPR005175 -
Cone8ag0353 300 PIRSF ESCAROLA 12 300 IPR014476 GO:0003680(InterPro)
Cone8ag0353 300 CDD DUF296 105 188 IPR005175 -
Cone8ag0353 300 FunFam AT-hook motif nuclear-localized protein 104 231 - -
Cone8ag0353 300 MobiDBLite consensus disorder prediction 251 266 - -
Cone8ag0353 300 Gene3D - 104 237 - -
Cone8ag0353 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 230 - -
Cone8ag0353 300 ProSiteProfiles PPC domain profile profile. 101 240 IPR005175 -
Cone8ag0353 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 300 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone8ag0353 300 MobiDBLite consensus disorder prediction 1 96 - -
Cone8ag0353 300 MobiDBLite consensus disorder prediction 43 81 - -
Cone8ag0353 300 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0335 Cone-Chr15:1556311 Cone8ag0353 Cone-Chr8:2019529 7.98E-99 dispersed
Cone17ag1172 Cone-Chr17:8610336 Cone8ag0353 Cone-Chr8:2019529 1.86E-53 dispersed
Cone18ag1132 Cone-Chr18:8173667 Cone8ag0353 Cone-Chr8:2019529 1.14E-96 dispersed
Cone3ag1257 Cone-Chr3:31399475 Cone8ag0353 Cone-Chr8:2019529 3.95E-69 dispersed
Cone5ag0555 Cone-Chr5:2375683 Cone8ag0353 Cone-Chr8:2019529 1.86E-78 dispersed
Cone6ag1619 Cone-Chr6:12498853 Cone8ag0353 Cone-Chr8:2019529 6.37E-75 dispersed
Cone8ag0353 Cone-Chr8:2019529 Cone9ag0727 Cone-Chr9:3470444 4.04E-117 dispersed
Cone8ag0353 Cone-Chr8:2019529 Cone8ag0357 Cone-Chr8:2067946 7.07E-23 proximal
Cone12ag0347 Cone-Chr12:1886783 Cone8ag0353 Cone-Chr8:2019529 1.18E-154 wgd
Cone14ag0141 Cone-Chr14:683830 Cone8ag0353 Cone-Chr8:2019529 5.22E-81 wgd
Cone14ag0306 Cone-Chr14:1406920 Cone8ag0353 Cone-Chr8:2019529 2.18E-19 wgd
Cone15ag0149 Cone-Chr15:720428 Cone8ag0353 Cone-Chr8:2019529 2.91E-76 wgd
Cone15ag0333 Cone-Chr15:1527904 Cone8ag0353 Cone-Chr8:2019529 1.21E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0353 - - - 0.0