Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0386 ATGTCATCATCGTCCTCTCCTCCTCCTCCGCCTCCTCCTACCTTGTCTCAACTGGACAACCAATTCCTTCCTCCCTCCGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGCACGAGCTTGTTTAAGACTGTGACGGTGAGATGTGGACACTGCTCAACCCTCTTGCCAGTGAACATGCGGGGACTGCTTTTGCCTTCGGCTAATCAATTTCACCAGCTTACTCACTCTTTCTTCAACCCTAATTCCCATAATATTCTGGAAGAAACGCCAAATCCAACCCCAAACTTCATGATCAACCAAACAAACATTGGAAATGATCCCTCGGCTAATTCTTTGCAGCCACCTCGAGTTGTACCTCATGATGAACTTTCAAGAGTTCCTCCCATCATAAACAGACCTCCAGAGAAGAGGCAACGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATCTCCCACAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGGCTGACCAGACTGTGAAAAAGACAAACATGCGTCCGGAGGGAGATCATGATCATGTGCTGATGAAGGATGCAGGGTTCTTTGCTTCAGCTAATGTGGGTGTGTCCCACTTCTGA 702 48.86 MSSSSSPPPPPPPTLSQLDNQFLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCSTLLPVNMRGLLLPSANQFHQLTHSFFNPNSHNILEETPNPTPNFMINQTNIGNDPSANSLQPPRVVPHDELSRVPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMADQTVKKTNMRPEGDHDHVLMKDAGFFASANVGVSHF 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2354763 2356854 - Conep08aG0040200.1 Cone8ag0386 442935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0386 233 Pfam YABBY protein 25 195 IPR006780 GO:0007275(InterPro)
Cone8ag0386 233 Gene3D High mobility group box domain 140 200 IPR036910 -
Cone8ag0386 233 SUPERFAMILY HMG-box 134 189 IPR036910 -
Cone8ag0386 233 PANTHER PROTEIN YABBY 6-RELATED 25 203 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cone8ag0386 233 CDD HMG-box_SF 149 185 - -
Cone8ag0386 233 FunFam Axial regulator YABBY 140 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0386 K25796 - - mtr:11410996 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0895 Cone-Chr13:7927670 Cone8ag0386 Cone-Chr8:2354763 9.34E-41 dispersed
Cone19ag0892 Cone-Chr19:6993345 Cone8ag0386 Cone-Chr8:2354763 7.54E-38 dispersed
Cone4ag0666 Cone-Chr4:3264688 Cone8ag0386 Cone-Chr8:2354763 4.83E-52 dispersed
Cone12ag0372 Cone-Chr12:2132460 Cone8ag0386 Cone-Chr8:2354763 4.74E-150 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone8ag0386 Cone-Chr8:2354763 8.25E-95 wgd
Cone8ag0386 Cone-Chr8:2354763 Cone9ag0698 Cone-Chr9:3356189 1.63E-94 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0895 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 66.9 1.9e-49 193.0
Cone19ag0892 . 1 155 C2C2-YABBY Transcription Factor Family AT1G69180 58.2 1.1e-41 167.2
Cone9ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 3.9e-41 165.2
Cone12ag0372 . 66 230 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 6.7e-41 164.5
Cone8ag0386 . 69 233 C2C2-YABBY Transcription Factor Family AT2G45190 57.5 7.4e-40 161.0
Cone6ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 53.5 4.8e-39 158.3
Cone11ag1432 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 60.0 4.0e-50 195.3
Cone12ag0372 . 23 205 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.0e-42 169.1
Cone6ag0698 . 26 218 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 3.4e-41 165.6
Cone8ag0386 . 26 202 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 4.4e-41 165.2
Cone4ag0666 . 11 175 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 9.8e-41 164.1
Cone18ag0157 . 1 150 C2C2-YABBY Transcription Factor Family AT1G08465 60.7 9.8e-41 164.1
Cone9ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.8 2.8e-52 202.6
Cone6ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 8.2e-52 201.1
Cone8ag0386 . 36 232 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 1.1e-45 180.6
Cone12ag0372 . 33 229 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 2.2e-44 176.4
Cone4ag0666 . 11 176 C2C2-YABBY Transcription Factor Family AT2G26580 72.5 5.3e-62 234.6
Cone11ag1432 . 4 177 C2C2-YABBY Transcription Factor Family AT2G26580 54.6 4.9e-44 174.9
Cone6ag0698 . 26 200 C2C2-YABBY Transcription Factor Family AT2G26580 50.8 1.3e-41 166.8
Cone9ag0698 . 26 208 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 1.8e-41 166.4
Cone8ag0386 . 26 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.9e-40 162.9
Cone12ag0372 . 23 193 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46643 PF03501 S10_plectin 2.90E-43 CL0123 Cone TF