Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0386 ATGTCATCATCGTCCTCTCCTCCTCCTCCGCCTCCTCCTACCTTGTCTCAACTGGACAACCAATTCCTTCCTCCCTCCGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGCACGAGCTTGTTTAAGACTGTGACGGTGAGATGTGGACACTGCTCAACCCTCTTGCCAGTGAACATGCGGGGACTGCTTTTGCCTTCGGCTAATCAATTTCACCAGCTTACTCACTCTTTCTTCAACCCTAATTCCCATAATATTCTGGAAGAAACGCCAAATCCAACCCCAAACTTCATGATCAACCAAACAAACATTGGAAATGATCCCTCGGCTAATTCTTTGCAGCCACCTCGAGTTGTACCTCATGATGAACTTTCAAGAGTTCCTCCCATCATAAACAGACCTCCAGAGAAGAGGCAACGAGTGCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATCTCCCACAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGGCTGACCAGACTGTGAAAAAGACAAACATGCGTCCGGAGGGAGATCATGATCATGTGCTGATGAAGGATGCAGGGTTCTTTGCTTCAGCTAATGTGGGTGTGTCCCACTTCTGA 702 48.86 MSSSSSPPPPPPPTLSQLDNQFLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCSTLLPVNMRGLLLPSANQFHQLTHSFFNPNSHNILEETPNPTPNFMINQTNIGNDPSANSLQPPRVVPHDELSRVPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMADQTVKKTNMRPEGDHDHVLMKDAGFFASANVGVSHF 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2354763 2356854 - Conep08aG0040200.1 Cone8ag0386 442935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0386 233 Pfam YABBY protein 25 195 IPR006780 GO:0007275(InterPro)
Cone8ag0386 233 Gene3D High mobility group box domain 140 200 IPR036910 -
Cone8ag0386 233 SUPERFAMILY HMG-box 134 189 IPR036910 -
Cone8ag0386 233 PANTHER PROTEIN YABBY 6-RELATED 25 203 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cone8ag0386 233 CDD HMG-box_SF 149 185 - -
Cone8ag0386 233 FunFam Axial regulator YABBY 140 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0895 Cone-Chr13:7927670 Cone8ag0386 Cone-Chr8:2354763 9.34E-41 dispersed
Cone19ag0892 Cone-Chr19:6993345 Cone8ag0386 Cone-Chr8:2354763 7.54E-38 dispersed
Cone4ag0666 Cone-Chr4:3264688 Cone8ag0386 Cone-Chr8:2354763 4.83E-52 dispersed
Cone12ag0372 Cone-Chr12:2132460 Cone8ag0386 Cone-Chr8:2354763 4.74E-150 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone8ag0386 Cone-Chr8:2354763 8.25E-95 wgd
Cone8ag0386 Cone-Chr8:2354763 Cone9ag0698 Cone-Chr9:3356189 1.63E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46643 PF03501 S10_plectin 2.90E-43 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0386 K25796 - mtr:11410996 329.331