Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0398 ATGGACGGGGAAGAACTAGGACCATCTAACCGGGAACTGTACGCTCTGCTCCACATCGCCCCGGAAGCTTCCGACGAAGAAATCCGAAAAGCTTATCGTCAATGGGCACAAGTTTATCATCCAGATAAATACCAAGCTCCTCATATGAAAGATATTGCGACAGAAAATTTCCAACGAATATGTGAAGCATATGAGATATTAACGGATGAGACGAAGAGACAGATATATGACATTTATGGAATGGAAGGATTGACTTCAGGATTGGAACTTGGTCCAAAGCTTAATAAGGTAGAAGAGCTAAAGGAGGAGCTGGAAAGATTACGGCGAAGAAAGGAGGAGGAGAAGCTCTCAGCACATTTCCGACCTTCGGGTACAATACTGGCTAATATGTCTTTGCCGCACTTTCTAGAGGGTGATGGCATCATGAGAGGTATGGCAATGACAAGTGAAGTTCAGTCTCAGATATCAAAACACAGTGCTTTTGCACTTGGAGGAAATTTGGCAGTTAATGGGAATTCTGGTGGTGGGGCAGCTACTGCTCTGTTTCGGCATCAAATTTCTTCAGTTTCTTCTATAGAAATTATGGCTTCTGCCGGTTTACGATCACTTATTGGAGTGCAAACGACTCGTCACCTCTCAACACACTCTACAGCAACAATGGGCCTTGCAATGTCTTTGAATGATGGTTCATTGAATCTCTCCAACACCTGGACTCGCCAGTTGTCTGAAACTGCAAATGGAAATATACAGCTTGTTCTAGGTTCAGAATCATCTGTTGGGGTTGGATGGCAAAAGAAAGAAGACAAGTTTTCAGCTGCAGGAGAGCTGAAGCTTGGCACAAGTTCTTTTGGGGCATCAGCTCATTACACCCATCGCTTTTCCTCCAAGTCTCATGGCCAAATTACAGGCAGAGTTGGAAGTAATGCTCTTGAGATTGAAGTTGGTGGTGGGAGGAAATTATCTAGATTCAGTACTCTCCGCATGATGTATTCAATAGGGATTCAGGGTATATTTTGGAAATTCGAATTGCATCGAGGAGGCCAAAAATTGATTATTCCAATTTTGCTTTCCCGGGATTTGAACCCTGTATTTGCTACTGGAGCAGTCATTATTCCAAGTTCAGTTTACTTTTTGCTCAAGAAATTTGTTATCAAACCATTTTACATTAGAAGGGAAAAGCAAAAGGCTTTGGAGAATGTTGAAAAAACTTCTTCTCAGGTTAAAGAGGCAAGGTTGGCTGCTGAGAAAGCCCAGCAGCTACTGCAAAACGTGGCCAACAGGAAAAGAAACAAACAGCTCGAAACAGGTGGACTTGTTGTCACTAAAGCAGTGTATGGAAATAGTAAACAGTTGAAGAAAGCAAATGATTCAAGAGAATCAAATGATGAATCATCTTCACAAATTATAGATGTCACATTACCGCTAAATTTCCTTGTTAATGACTCCGGCCAGCTAAAGCTTCATCAAGGTGTCAAGAAGTCGGGTATCATGGGCTTTTGTGATCCATGTCCCGGAGAACCGAAAAGCTTACAAATGGAATACACTTATGGTGGCCGGAGATACCAGCGTATAAACTGA 1578 42.4 MDGEELGPSNRELYALLHIAPEASDEEIRKAYRQWAQVYHPDKYQAPHMKDIATENFQRICEAYEILTDETKRQIYDIYGMEGLTSGLELGPKLNKVEELKEELERLRRRKEEEKLSAHFRPSGTILANMSLPHFLEGDGIMRGMAMTSEVQSQISKHSAFALGGNLAVNGNSGGGAATALFRHQISSVSSIEIMASAGLRSLIGVQTTRHLSTHSTATMGLAMSLNDGSLNLSNTWTRQLSETANGNIQLVLGSESSVGVGWQKKEDKFSAAGELKLGTSSFGASAHYTHRFSSKSHGQITGRVGSNALEIEVGGGRKLSRFSTLRMMYSIGIQGIFWKFELHRGGQKLIIPILLSRDLNPVFATGAVIIPSSVYFLLKKFVIKPFYIRREKQKALENVEKTSSQVKEARLAAEKAQQLLQNVANRKRNKQLETGGLVVTKAVYGNSKQLKKANDSRESNDESSSQIIDVTLPLNFLVNDSGQLKLHQGVKKSGIMGFCDPCPGEPKSLQMEYTYGGRRYQRIN 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2450196 2455006 - Conep08aG0041400.1 Cone8ag0398 442947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0398 525 PANTHER CHAPERONE PROTEIN DNAJ 13 1 523 IPR042162 -
Cone8ag0398 525 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Cone8ag0398 525 Coils Coil 90 117 - -
Cone8ag0398 525 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Cone8ag0398 525 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Cone8ag0398 525 CDD DnaJ 12 69 IPR001623 -
Cone8ag0398 525 SMART dnaj_3 11 72 IPR001623 -
Cone8ag0398 525 Pfam DNAJC11, beta-barrel domain 145 350 - -
Cone8ag0398 525 Pfam DnaJ domain 13 77 IPR001623 -
Cone8ag0398 525 Gene3D DnaJ domain 4 90 IPR036869 -
Cone8ag0398 525 Pfam DnaJ-like protein C11, C-terminal 399 522 IPR024586 -
Cone8ag0398 525 Coils Coil 390 434 - -
Cone8ag0398 525 PRINTS DnaJ domain signature 72 91 IPR001623 -
Cone8ag0398 525 PRINTS DnaJ domain signature 14 32 IPR001623 -
Cone8ag0398 525 PRINTS DnaJ domain signature 32 47 IPR001623 -
Cone8ag0398 525 PRINTS DnaJ domain signature 52 72 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0398 K09531 - - csv:101219828 833.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0408 Cone-Chr6:1965819 Cone8ag0398 Cone-Chr8:2450196 1.55E-09 dispersed
Cone8ag0398 Cone-Chr8:2450196 Cone9ag1474 Cone-Chr9:10890100 8.75E-11 dispersed
Cone12ag0383 Cone-Chr12:2199807 Cone8ag0398 Cone-Chr8:2450196 1.35E-244 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g538 Blo02g01041 . . Bda08g00579 Bpe05g00578 . . . Cmo06g00801 Cmo16g01191 . . . . Sed04g1713 Cpe14g00943 . Bhi11g00191 Tan01g2031 Cmetu06g0830 . . Mch10g1566 . Cla10g00256 Cam10g0262 Cec10g0270 Cco10g0268 Clacu10g0264 Cmu10g1107 Cre10g0515 Cone8ag0398 Cone12ag0383 . . Lsi07g01301 . . Cme06g02570 . . . . . . Bma05g00764 . . . . Cma06g00781 Cma16g01139 Car06g00695 Car16g01074 Cpe08g00742 . . . . . . . . . . . . . . . . Csa03g00274 Chy06g02048 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007265 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 37