Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0400 ATGGCTTCTTACCTTATTACTTTTTTCTTCTTCATCTTCATTTCCATGCTCATTCGGTCACTATCTGATGCAGGATTTCCAACGATTCCCAGTACTTCAGCAACAACTAACCACACAACCAACTCATCCACCAGTACTCACAAGCATCCTCATCACAAGTGGGTGGGACCCATCGGCTACCGCCTCATCACGGTCGATATCAATGGCACCGGAGACTTCCATTCCGTCCAAGCTGCAGTAGATGAAGTCCCGAATTACAACAGAAAAATCGTCGTCATTAAAATCAGCCCCGGTTATTACAAAGAGAAGGTGGTGGTGCCGGCTACGAAGCCGTACATAACATTCCAAGGAAGCGGTAGAGACGTGACGGTAATCGAATGGCATGATCGGGCCCTAGATCGAGGCGCTAATGGTCAACAGTTGCGTACTTACCGAACAGCTTCTGTTACTGTTTTCGCTAATTACTTCTCTGCTAGAAACATCAGCTTCAAGAATACGGCACCGGCACCATTGCCGGGAATGCAAGGGTGGCAAGCGGCAGCATTCCGGATATCGGGTGACAAGGCATATTTCTCGGGGTGTGGATTCTATGGAGCTCAGGACACACTCTGTGACGATGCCGGAAGACATTACTTCAAGAATTGTTATATTGAGGGCTCCATTGACTTTATCTTTGGAAATGGCCGCTCAATGTATAAGGACTGCAATCTGCACTCCATAGCTACAAGGTTCGGTTCCATAGCGGCACAAGATAGAAAGTCACCAGACGAGAAAACAGGCTTCGCTTTTGTGGGCTGCAAGGTGACGGGTACGGGACCTCTATATCTGGGCCGGGCCATGGGCCAACACTCTAGGATTGTCTACTCCTACACATACTTTGATGACGTGGTCGCACATGGTGGATGGGATGACTGGGACCACGTCAGCAACAAGAACAAGACCGTGTTTTTCGCTGTGTACAAGTGCTGGGGCCCAGGAGCTTCTGCGGCCCGTGGAGTGTCATGGGCCAGAGAGCTAGACTTCGATACGGCCCATCCGTTCATTAGAAAGAGCTTTGTCAATGGCAGGCACTGGATTGCACCTTCTGATGCTTAA 1095 49.5 MASYLITFFFFIFISMLIRSLSDAGFPTIPSTSATTNHTTNSSTSTHKHPHHKWVGPIGYRLITVDINGTGDFHSVQAAVDEVPNYNRKIVVIKISPGYYKEKVVVPATKPYITFQGSGRDVTVIEWHDRALDRGANGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKNCYIEGSIDFIFGNGRSMYKDCNLHSIATRFGSIAAQDRKSPDEKTGFAFVGCKVTGTGPLYLGRAMGQHSRIVYSYTYFDDVVAHGGWDDWDHVSNKNKTVFFAVYKCWGPGASAARGVSWARELDFDTAHPFIRKSFVNGRHWIAPSDA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2461221 2463275 + Conep08aG0041600.1 Cone8ag0400 442949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0400 364 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Cone8ag0400 364 SUPERFAMILY Pectin lyase-like 61 361 IPR011050 -
Cone8ag0400 364 FunFam Pectinesterase 59 361 - -
Cone8ag0400 364 Pfam Pectinesterase 63 355 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone8ag0400 364 Gene3D - 61 363 IPR012334 -
Cone8ag0400 364 MobiDBLite consensus disorder prediction 32 51 - -
Cone8ag0400 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0761 Cone-Chr4:4278843 Cone8ag0400 Cone-Chr8:2461221 3.52E-97 dispersed
Cone4ag0965 Cone-Chr4:8367654 Cone8ag0400 Cone-Chr8:2461221 7.97E-105 dispersed
Cone5ag1414 Cone-Chr5:8848508 Cone8ag0400 Cone-Chr8:2461221 1.25E-31 dispersed
Cone6ag0018 Cone-Chr6:116009 Cone8ag0400 Cone-Chr8:2461221 2.53E-91 dispersed
Cone7ag1167 Cone-Chr7:8690853 Cone8ag0400 Cone-Chr8:2461221 1.88E-103 dispersed
Cone8ag0400 Cone-Chr8:2461221 Cone9ag0017 Cone-Chr9:94586 1.05E-91 dispersed
Cone12ag0384 Cone-Chr12:2206079 Cone8ag0400 Cone-Chr8:2461221 4.25E-250 wgd
Cone5ag0802 Cone-Chr5:3450694 Cone8ag0400 Cone-Chr8:2461221 1.36E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0400 - - - 0.0