Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0418 ATGTATATAGAGGAAGTGAACGAAGGGGAAGGGGTGGAGAGTAGGGAAGGAGGAAATTCATCTGTTGAAGGTTGTGATTTGAGAAGCCATAGAATCGATGTGTCCAATACCCAAAGGATTTTGGTTGGAGCTGGAGCTAGGGCTCTCTTTTATCCAACTCTACTATACAATGTTGTCAGGAACAAACTTCAGGTTGAGTTCCGATGGTGGGATAGGGTTGATGAGTTTATACTGTTAGGTGCTGTTCCATTCCCTTCTGATGTTCCTCGCTTGAAGGAACTTGGGGTTCGTGGAGTGATTACATTGAATGAACCATATGAGACCTTGGTTCCAACGAATCTCTATCATGCTCTTGACATTGATCATCTTGTTATCCCTACAAGGGACTATTGTTTTGCACCTTCAACGAGTGACATTACCCGTGCGGTAAACTTTATTCACGAAAAATCATTGGGTGGGCAAACTACCTATGTCCACTGCAAAGCTGGCCGAGGACGCAGCACAACTGTTGTAATATGCTACCTGGTGCAGTACAAGCAGATGACACCAGATGTTGCATATGATTACCTGAGGTCAATAAGACGAAGGGTGCTTTTAGCGTCTTCCCAGTGGCAGGCTGTCCAAGAATTCTACCATTGTAAGGTGAAGAAGACACCTATTTTCTACCACCAAATGACTGATCTGATTACGAAACTTCCGAGATGGGAACAAGTCTCTCAAGAAGTCGCGTTTGACGATAGCTCCGTAGTTCTTGTAACCAAATCCGATCTAGAAGGATATGAAAATGATCTCAAGACATGTTCTGTTGGAAATGAAATATGGGCAGATGTAAGTGTCATCTATCGATTTAGGGTAGCCGGTCAGTCTGCTCTGGGTAGGATATCTTGCCTATGGGTCCGTTACCGTGGGGACCACCAGAATATTCCCAGGGAGAAGCTAAGTAGGGAAGGTAGCTGCTCAATCAGGACCACTCATCTGGAAGGTATCAGTGTGGATATTCAAGTGTGCTGA 1011 44.71 MYIEEVNEGEGVESREGGNSSVEGCDLRSHRIDVSNTQRILVGAGARALFYPTLLYNVVRNKLQVEFRWWDRVDEFILLGAVPFPSDVPRLKELGVRGVITLNEPYETLVPTNLYHALDIDHLVIPTRDYCFAPSTSDITRAVNFIHEKSLGGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDVAYDYLRSIRRRVLLASSQWQAVQEFYHCKVKKTPIFYHQMTDLITKLPRWEQVSQEVAFDDSSVVLVTKSDLEGYENDLKTCSVGNEIWADVSVIYRFRVAGQSALGRISCLWVRYRGDHQNIPREKLSREGSCSIRTTHLEGISVDIQVC 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2586147 2588288 + Conep08aG0043400.1 Cone8ag0418 442967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0418 336 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311(InterPro)
Cone8ag0418 336 FunFam Dual specificity phosphatase domain protein 69 216 - -
Cone8ag0418 336 Gene3D Protein tyrosine phosphatase superfamily 69 217 IPR029021 -
Cone8ag0418 336 CDD PTPMT1 69 211 IPR044596 GO:0004721(InterPro)
Cone8ag0418 336 SMART dsp_5 72 213 IPR020422 GO:0006470(InterPro)
Cone8ag0418 336 MobiDBLite consensus disorder prediction 1 22 - -
Cone8ag0418 336 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 216 IPR020422 GO:0006470(InterPro)
Cone8ag0418 336 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 290 - -
Cone8ag0418 336 Pfam Dual specificity phosphatase, catalytic domain 91 211 IPR000340 GO:0016311(InterPro)
Cone8ag0418 336 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 137 205 IPR000387 GO:0016311(InterPro)
Cone8ag0418 336 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 62 213 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0974 Cone-Chr4:8426607 Cone8ag0418 Cone-Chr8:2586147 3.68E-95 dispersed
Cone7ag1160 Cone-Chr7:8657221 Cone8ag0418 Cone-Chr8:2586147 9.68E-93 dispersed
Cone12ag0399 Cone-Chr12:2339405 Cone8ag0418 Cone-Chr8:2586147 1.04E-223 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0418 - - - 0.0