Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag0420 | ATGAAGAACGTAGAGTTATCTGCGCTGGAGGATATCAAGAAGCATCTTCTTGGAGAATTCTCACCGGTCATGAAGAACTTTTATGGTGAACTAAACAATTCCGACTCCGATTATCTCTTAGGTGAATTCTTGTCCTGGGAAGTGAAATTGGAGTCTTCGAGCTCTAGATCTTATGATGATTCTTCGTTCTCCAAAGCCTCTAGCACTGAATCTTCCATTTCCATCTCTGACTACTTCGACTCCACTGAACTGCTCGATTTCTCTTCGAATCTTGTAACAGTCGACGAAAAACGAAGCGTTTTCTCTGAATATGATTCGAAACCTCGTGTAATCGACCTTACGACGCCAAAATCTTCTGATTCGAGTTCACGAACGAGTAATAATAATTCGTTTGAGTTCGAACCCAAGGTGTTAGTTGCTGGAAATGGAAGCTCAATCTCCAGATCTAACATCATCAACTCGATCGAGTACAAATCGAAACCTCAGATTTACGATGGAGCAGCAGCGAAAAACTTGAACGGGAAACCAGCCAATTTGAAGATCTCGCCTCCTAACAGAACTGAATGGATACATTTCTCTAAACCGGATCCGGTTCAGATAAGTTCAGTTACGGCTGTGGAGGAGATCAGTAAGCACTACCGAGGTATCCGACGACGGCCGTGGGGAAAGTTCGCTGCGGAGATCCGTGACCCCAACCGTCGCGGGTCTAGAGTTTGGCTTGGAACGTTCGAGACGGCGATCGAAGCTGCTAGAGCCTACGATCGAGCCGCGTTCAAGCTTCGCGGCTCGAAAGCCATACTCAACTTCCCTCTGGAAGTTACACATTATAGCTCAGAATCTGAGGGCGTGATTAGGAAACGGCAGAGGGAGGAGAAACCGGAGGAAGTGAAGAAGGGGAAGAAGGAGAAGACGGAGAAGAGGAAGGTTGATGTTGTTAGTTATCTTGGAGATGTTCCGTTAACGCCGTCAAGCTGGATGACCGTTTGGGATACGGATGTGAAGGGGGTACTTAACGTTCCGCTGTTATCTCCCTTATCTCCACATCCGGCGTTCACTTATAATCAGCTTATGGTTGTGTGA | 1080 | 46.57 | MKNVELSALEDIKKHLLGEFSPVMKNFYGELNNSDSDYLLGEFLSWEVKLESSSSRSYDDSSFSKASSTESSISISDYFDSTELLDFSSNLVTVDEKRSVFSEYDSKPRVIDLTTPKSSDSSSRTSNNNSFEFEPKVLVAGNGSSISRSNIINSIEYKSKPQIYDGAAAKNLNGKPANLKISPPNRTEWIHFSKPDPVQISSVTAVEEISKHYRGIRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKLRGSKAILNFPLEVTHYSSESEGVIRKRQREEKPEEVKKGKKEKTEKRKVDVVSYLGDVPLTPSSWMTVWDTDVKGVLNVPLLSPLSPHPAFTYNQLMVV | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2610186 | 2611510 | - | Conep08aG0043600.1 | Cone8ag0420 | 442969 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag0420 | 359 | SUPERFAMILY | DNA-binding domain | 212 | 272 | IPR016177 | GO:0003677(InterPro) | |
Cone8ag0420 | 359 | ProSiteProfiles | AP2/ERF domain profile. | 212 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | PANTHER | DNA-BINDING DOMAIN | 99 | 296 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Cone8ag0420 | 359 | Gene3D | AP2/ERF domain | 211 | 272 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | FunFam | Ethylene-responsive transcription factor 2 | 211 | 272 | - | - | |
Cone8ag0420 | 359 | PRINTS | Ethylene responsive element binding protein signature | 213 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | PRINTS | Ethylene responsive element binding protein signature | 252 | 272 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | Pfam | AP2 domain | 212 | 263 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | CDD | AP2 | 211 | 270 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | SMART | rav1_2 | 212 | 276 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0420 | 359 | MobiDBLite | consensus disorder prediction | 283 | 303 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone6ag0981 | Cone-Chr6:5336761 | Cone8ag0420 | Cone-Chr8:2610186 | 7.21E-26 | dispersed | |
Cone7ag1001 | Cone-Chr7:7739103 | Cone8ag0420 | Cone-Chr8:2610186 | 5.81E-24 | dispersed | |
Cone8ag0420 | Cone-Chr8:2610186 | Cone9ag0654 | Cone-Chr9:3117004 | 7.59E-59 | dispersed | |
Cone12ag0404 | Cone-Chr12:2370752 | Cone8ag0420 | Cone-Chr8:2610186 | 1.09E-185 | wgd | |
Cone15ag0522 | Cone-Chr15:2553295 | Cone8ag0420 | Cone-Chr8:2610186 | 6.08E-22 | wgd | |
Cone5ag0766 | Cone-Chr5:3283128 | Cone8ag0420 | Cone-Chr8:2610186 | 4.64E-28 | wgd | |
Cone6ag0649 | Cone-Chr6:3279735 | Cone8ag0420 | Cone-Chr8:2610186 | 2.85E-29 | wgd | |
Cone8ag0420 | Cone-Chr8:2610186 | Cone9ag0653 | Cone-Chr9:3110330 | 4.59E-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46648 | PF07500 | TFIIS_M | 3.00E-17 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag0420 | K09286 | - | mdm:103427506 | 263.462 |