Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0420 ATGAAGAACGTAGAGTTATCTGCGCTGGAGGATATCAAGAAGCATCTTCTTGGAGAATTCTCACCGGTCATGAAGAACTTTTATGGTGAACTAAACAATTCCGACTCCGATTATCTCTTAGGTGAATTCTTGTCCTGGGAAGTGAAATTGGAGTCTTCGAGCTCTAGATCTTATGATGATTCTTCGTTCTCCAAAGCCTCTAGCACTGAATCTTCCATTTCCATCTCTGACTACTTCGACTCCACTGAACTGCTCGATTTCTCTTCGAATCTTGTAACAGTCGACGAAAAACGAAGCGTTTTCTCTGAATATGATTCGAAACCTCGTGTAATCGACCTTACGACGCCAAAATCTTCTGATTCGAGTTCACGAACGAGTAATAATAATTCGTTTGAGTTCGAACCCAAGGTGTTAGTTGCTGGAAATGGAAGCTCAATCTCCAGATCTAACATCATCAACTCGATCGAGTACAAATCGAAACCTCAGATTTACGATGGAGCAGCAGCGAAAAACTTGAACGGGAAACCAGCCAATTTGAAGATCTCGCCTCCTAACAGAACTGAATGGATACATTTCTCTAAACCGGATCCGGTTCAGATAAGTTCAGTTACGGCTGTGGAGGAGATCAGTAAGCACTACCGAGGTATCCGACGACGGCCGTGGGGAAAGTTCGCTGCGGAGATCCGTGACCCCAACCGTCGCGGGTCTAGAGTTTGGCTTGGAACGTTCGAGACGGCGATCGAAGCTGCTAGAGCCTACGATCGAGCCGCGTTCAAGCTTCGCGGCTCGAAAGCCATACTCAACTTCCCTCTGGAAGTTACACATTATAGCTCAGAATCTGAGGGCGTGATTAGGAAACGGCAGAGGGAGGAGAAACCGGAGGAAGTGAAGAAGGGGAAGAAGGAGAAGACGGAGAAGAGGAAGGTTGATGTTGTTAGTTATCTTGGAGATGTTCCGTTAACGCCGTCAAGCTGGATGACCGTTTGGGATACGGATGTGAAGGGGGTACTTAACGTTCCGCTGTTATCTCCCTTATCTCCACATCCGGCGTTCACTTATAATCAGCTTATGGTTGTGTGA 1080 46.57 MKNVELSALEDIKKHLLGEFSPVMKNFYGELNNSDSDYLLGEFLSWEVKLESSSSRSYDDSSFSKASSTESSISISDYFDSTELLDFSSNLVTVDEKRSVFSEYDSKPRVIDLTTPKSSDSSSRTSNNNSFEFEPKVLVAGNGSSISRSNIINSIEYKSKPQIYDGAAAKNLNGKPANLKISPPNRTEWIHFSKPDPVQISSVTAVEEISKHYRGIRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKLRGSKAILNFPLEVTHYSSESEGVIRKRQREEKPEEVKKGKKEKTEKRKVDVVSYLGDVPLTPSSWMTVWDTDVKGVLNVPLLSPLSPHPAFTYNQLMVV 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2610186 2611510 - Conep08aG0043600.1 Cone8ag0420 442969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0420 359 SUPERFAMILY DNA-binding domain 212 272 IPR016177 GO:0003677(InterPro)
Cone8ag0420 359 ProSiteProfiles AP2/ERF domain profile. 212 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 PANTHER DNA-BINDING DOMAIN 99 296 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone8ag0420 359 Gene3D AP2/ERF domain 211 272 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 FunFam Ethylene-responsive transcription factor 2 211 272 - -
Cone8ag0420 359 PRINTS Ethylene responsive element binding protein signature 213 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 PRINTS Ethylene responsive element binding protein signature 252 272 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 Pfam AP2 domain 212 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 CDD AP2 211 270 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 SMART rav1_2 212 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0420 359 MobiDBLite consensus disorder prediction 283 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0981 Cone-Chr6:5336761 Cone8ag0420 Cone-Chr8:2610186 7.21E-26 dispersed
Cone7ag1001 Cone-Chr7:7739103 Cone8ag0420 Cone-Chr8:2610186 5.81E-24 dispersed
Cone8ag0420 Cone-Chr8:2610186 Cone9ag0654 Cone-Chr9:3117004 7.59E-59 dispersed
Cone12ag0404 Cone-Chr12:2370752 Cone8ag0420 Cone-Chr8:2610186 1.09E-185 wgd
Cone15ag0522 Cone-Chr15:2553295 Cone8ag0420 Cone-Chr8:2610186 6.08E-22 wgd
Cone5ag0766 Cone-Chr5:3283128 Cone8ag0420 Cone-Chr8:2610186 4.64E-28 wgd
Cone6ag0649 Cone-Chr6:3279735 Cone8ag0420 Cone-Chr8:2610186 2.85E-29 wgd
Cone8ag0420 Cone-Chr8:2610186 Cone9ag0653 Cone-Chr9:3110330 4.59E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46648 PF07500 TFIIS_M 3.00E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0420 K09286 - mdm:103427506 263.462