Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0436 ATGCAGAGGGAGAGAGGTGGAGGTGGGGCGAAACTGGATGGGAATTCTATCGATCGGAAGCGAATCAACGAGGCTCTTGATAAGCAGTTGGAGCGATCCTCGCCGTCCACTTCTAGGGCGATGATCAACGGAAAGGAAAAGACTACTGAGCATTCGATTCTGATGGGGAAGCAGCTCTCTGATCAGAGGGATTCTCGCTCTAAGACTATTGGCTCCAATGAATCTGAAACTGACAGTGAGGAGTCAGATGTTAGTGGTTCTGATGGAGATGATACCTCGTGGATCTCATGGTTTTGTAGTCTCCGAGGAAATGAATTTTATTGTGAAGTCGACGACGATTACATACAAGATGACTTTAACCTCTGTGGGTTAAGTGGTCAAGTTCCATATTATGACTATGCACTCGATCTGATTCTGGACGTTGAGTCCTCTAATGAAGAGCAGAATGAACTTATTGAATCGGCAGCAGAGATGCTTTATGGATTGATTCATGCCCGATACATATTGACCAGCAAAGGAATGGCTGCTATGCTGGACAAGTATAAGAACTATGACTTTGGGAGATGCCCAAGAGTCTACTGCTGTGGCCAACCCTGCCTTCCTGTTGGTCAATCGGATATTCCTCGTTCAAGCACTGTAAAGATATACTGTCCCAGGTGTGAAGATATTTACTACCCACGATCCAAGTATCAAGACATTGATGGAGCATATTTTGGAACCACATTTCCACACCTCTTCTTGATGACATACGGCCACCTAAAGCCACAGAAGGCCTCTCAGAGCTACGTTTCAAGAGTGTTTGGGTTCAAGATCCATAAACAATGA 825 45.21 MQRERGGGGAKLDGNSIDRKRINEALDKQLERSSPSTSRAMINGKEKTTEHSILMGKQLSDQRDSRSKTIGSNESETDSEESDVSGSDGDDTSWISWFCSLRGNEFYCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQDIDGAYFGTTFPHLFLMTYGHLKPQKASQSYVSRVFGFKIHKQ 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2735860 2738654 + Conep08aG0045300.1 Cone8ag0436 442985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0436 274 PRINTS Casein kinase II regulatory subunit family signature 160 181 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 PRINTS Casein kinase II regulatory subunit family signature 185 206 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 PRINTS Casein kinase II regulatory subunit family signature 234 251 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 PRINTS Casein kinase II regulatory subunit family signature 110 124 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 PRINTS Casein kinase II regulatory subunit family signature 93 109 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 PRINTS Casein kinase II regulatory subunit family signature 207 228 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 MobiDBLite consensus disorder prediction 1 90 - -
Cone8ag0436 274 ProSitePatterns Casein kinase II regulatory subunit signature. 189 220 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 PANTHER CASEIN KINASE II SUBUNIT BETA 73 273 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(PANTHER)|GO:0019887(InterPro)
Cone8ag0436 274 FunFam Casein kinase II subunit beta 86 185 - -
Cone8ag0436 274 Gene3D - 186 259 - -
Cone8ag0436 274 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 86 185 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 MobiDBLite consensus disorder prediction 14 28 - -
Cone8ag0436 274 FunFam Casein kinase II subunit beta 186 259 - -
Cone8ag0436 274 MobiDBLite consensus disorder prediction 29 43 - -
Cone8ag0436 274 Pfam Casein kinase II regulatory subunit 93 270 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 MobiDBLite consensus disorder prediction 61 75 - -
Cone8ag0436 274 SUPERFAMILY Casein kinase II beta subunit 91 273 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Cone8ag0436 274 SMART CK_II_beta_2 93 270 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0436 K03115 - - csv:101211694 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0274 Cone-Chr15:1277744 Cone8ag0436 Cone-Chr8:2735860 7.12E-155 dispersed
Cone12ag0421 Cone-Chr12:2506852 Cone8ag0436 Cone-Chr8:2735860 5.25E-187 wgd
Cone14ag0257 Cone-Chr14:1184204 Cone8ag0436 Cone-Chr8:2735860 1.18E-153 wgd
Cone6ag0629 Cone-Chr6:3178446 Cone8ag0436 Cone-Chr8:2735860 2.19E-146 wgd
Cone8ag0436 Cone-Chr8:2735860 Cone9ag0632 Cone-Chr9:3000540 1.15E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g570 . . . . . . . . . . Cma02g01578 . Car02g01342 . . . Cpe05g00212 . . . . . . . . . . . . . . Cone8ag0436 Cone12ag0421 Cone6ag0629 Cone9ag0632 . . Chy04g00032 . . Blo19g00259 . . . . . . Sed01g4060 . Cmo19g00397 . . . . . . Bhi05g00570 Tan07g1906 Cmetu04g2898 . Hepe06g1721 . Lcy12g1882 Cla09g01203 Cam09g1270 Cec09g1284 Cco09g1318 . . Cre09g1230 . Csa03g04669 . Cme04g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000972 4 4 2 2 3 2 4 2 2 2 2 2 3 2 2 3 2 6 4 2 2 3 2 2 2 2 2 10 2 2 84