Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0437 ATGGATTTAGGTCCGATAGCTAGGCGAACTAGGAGGAAGTTAGACGAAGCTCTAATGAGGTCATATGAGGAGATGAAGAGGAAGGAGAAAGAGAAGAAAAATCAGGTTAGATCGGAGGATTTCGTTAAGGGAAGTATGGGCTTTAATGACGGTGGCGAGAAGGTTAGGGTTGGCTCGGCAGGGAAATCCGAGCGTTCAATGGCCACTGTGCGATCTATGGGGGATTCCAAGGGCAGGAATATGGATAAGTCATCTTCTAGTGAAGAAGATAATGTAAATTCAGACGACACGACTTATAAGGAAGGTGAATCGAAGGAGGAGTCATATATTTCTGAGAGATCAGATTCTTCAGAAACGTCTGGCTCATCTGGTAGTGGTAGTGAAAGTGGGGAAGAGATGGAGATTTCTCAGAGGTCAGAGAGTTCTGATGATAGTGTTGTAGAGGTGAAAAGGAAGGGGGAAAGGGGGAGAGCTCAGAGTTCTGAGAGTTCAGATGATGGTGGTGTAGAGGTGAAAAGGAAGGAAGAAATGGGGGGAGAAGAGTCGGAAAGTTCGGATTGTCCAGAATCTTCGGAGAATTTGATTTCATGTGAAGGAACGGGGGGAAGATTGGAAAGGGGGGAAGAGGTTGTCAGTGAGAACTTAGAGAGGAAGAAGAGTGAAAAAGAGGTGAAGGGAAATTCGGTTCAGTCTGGATTGAGGAAGGAAATGTATGGAGCTAATCATCTGGTTGATGTCAAGGAGGAGGTAGAAGAGGAAAATGAGGAAGAAGTGGTCAGTGGTGTAAGCAGAAAGCTGAAGAAAGCAGAAGAAGAAAAGAGGAAGTCGGTTAAAGCTGCATTAAAGAGGAAGAAAGCATGTGAATCGGGTATTTCGGCTGGTGATCTTGGTCTAAAGCCTGATTTTGTGGCTAGCAGAACTCGTTCGAATGAAGGCTCAAGATCCAAAAGGAGTAGCATGGAGAAGGGAACAATCGCTGACCCTGTTTGTCTCGATGATGATGATGATGATGATTGTGAAAATTTCACTTCCAAGACTGGTTTTGGTACTGATACCAATTTTCCTGTGCTTGAAATTAAAGAAGAATGTGGAAGTAGTAGTAGTACTAAGAAAGCTAGGTTTGAAGAAGAGGAGATTTGTGAAAAGGATGTACCTTTGGGAAATAAGGACAGTAATGGAGAAGATGGCTTGGAATCTTCCAAGAGAGTGTCCAAGGTGGTGGGGAAGAATCTTGATGTAATCAATGTTCTTTTAGATTCAATCTCAAAAGAAGCGCCTTTAAAAGAAGAGTTCAGTTCCTCTATGGAGTTAGAAGATGAAGAAGGTCCATCACCTCCTTCTCAACCTGGTGTCATTTATCTTCCACTGAAGTTCCCTTCTGATCTTTATGCGAAACCAGATGAGGAGGAGGAAGATGTGCAAGCAGATGAATTGGATCCACTTTGGGCTGAGTTTGAATTTGGTCTCAGATCAAGAGAGATGGATTCCGTTAAAAATGATGAGGTAAGCAGAGCTGGTTTGTGTAGAAAAATTCTACAAATTATTTCACTGACAAATGGTAGAGTTACAATTTCTCGGGGTTTGATTTGGCTTATTGAGTTACTGGTAGAAAAAGAAGATATACTTCCTCAAGAGGTTGAAGCTGACCAAGCCACCAGTTGCCGTCGAGGGGATCATGAGCTTATTCTTGACGAAGAAATTGGTCTTATATGCAAGTGTTGCACACATATAGAACACGAAATCAGGGATATGGCACTTGAGTTTGCGCCAATTCCGTATGGAAAGTCAACCAGGAGATGCTCTGGCATGTTAGATCCCCTTAACTTTGATGATCTGAATCAAGACCCTAATGCTGATTCTTCCCATGGTTCCAAGCCAATAGGTGCAGGCACAGTTTGGGACATTATCCCTAGGGTAAAGAACAATATGTTTGAACATCAAAGGGAAGGATTTGAATTTCTTTGGAAAAATATAGGCGGGTCAATTCATCTTGACAAACTACAAGAGAAGAAGAACTTTGATTCAGGAAGTGGATGCATTATATCACATGCACCAGGAACGGGAAAGACCCGTCTGACCATCGTCTTTCTTCAGTCCTACATGGAATTCTACCCAAAATGTCATCCCCTAATCATAGCTCCCAAAAGTATGCTTCTTACATGGGAAGAAGAGCTCCAAAAGTGGAATTTTGACATCCCCTTTCACAACCTGAACAAGACAAAGCTCTCAGGCAAGGAAGATGCTAGGGCAGTGAATTGCTTGCCTAAAGATGGAAGAACGGATGACAATTCTAATCGCAAGGTGAAGTTATGTTCATGGCTCATGAGTAAAAGCATTCTTGGGATCAGTTATCCATTGTTCCAGCAACTTGTTGAAGAGCAAGGAAATTTCAGATTTCAGGAATTGAGTGCAAAGCAAAAATTGAAATCGGAGATGAGGAAAATCCTTCTAGAGCGTCCAGGTGTTCTAGTTCTGGATGAAGGACACATTCCAAGAAATGATGATAGTCTTATCTGGTGCGCTTTGACCAAAATGAAGACCGAAAAGCGGATTATTCTCTCTGGAACTCCTTTCCAAAACAATTTTACAGAGCTTTATAACACCCTCTGTTTGGTCAGGCCCACATTTTCCAACATGAACTTTCCTAAAAGCGAGGAAAGGTCTGTAAAAAGGCGAGGTCGGAAAACCAGTAGTAGATCAAGAGGAAAGTGGGAGTCCTTGACCAATTTGATTGGCAAATCAGATAATGATTATTTGCATGACTCCAAATTGCAAAAACTTAGAGAGATGATCGAACCCTTTGTACATATACACAGAGGTAATATACTACAGGAAAAGCTTCCTGGTTTGAGGAACTCTGTGGTTATATTAAAGCCAGCTGATTTGCAGAAGGAACTCCTTCTAAAGATCAAAGCAATGAAAAACGCGTTTGAGCTGGACCATGTAGAATCAATGATATCTGTTCATCCTTCTCTGTTGCTCGATTGCAAAGTAGATTTGCATGCTGATGAAGCTCTGTTAGAAAAGCTCAAATCACAAGCCGAGGCAGGAGCCAAGACAAAATTCCTAATAGAACTAATCGGCTTAAGCGAAGCTTTGAATGAAAAAGTTTTGGTTTTTAGCCAATACCTCGGGCCATTGTGCTTCATAAAGGGAATCCTTGAATCTAGTTTTGGTTGGACCGAAGGGAATGAGGTGATTCGCATGGAAGGGAAGGATGAATTGAAGAAAAGGCAAGATTTTATTAACACATTTAATGACGCATGTAGCAAAGTTAGAGTATTGCTTGCTTCAACCAAGGCTTGCTCTGAAGGGATAAATCTTGTAGGAGCTTCAAGGGTTGTGTTACTTGATGTTGTTTGGAACCCTTCTGTGGAAAGGCAAGCTATATGCCGTGCTTATAGGCTTGGACAAAAGAAATTTGTGTATGTTTACCATCTCATTACTTCTGGGACAAGAGAAGAAGATAAATATTGTAGGCAAGTGGAGAAGGACCGGATATCAAACTTGGTTTTCTCTGCTCCTAGCAGCGGTAGGGATATCATGCAGAAAGTCTTGGATGACAAGATTTTAGAAGCAATGCGTGAAAGTAAAATTCTTGAAGGCATGATAGAAAATATCCTTGACCAATCAAAGGAATCCGATCTGGTTAATAATTTCGGCTTGGTTGAGGACAGAAGGATGTAG 3687 41.77 MDLGPIARRTRRKLDEALMRSYEEMKRKEKEKKNQVRSEDFVKGSMGFNDGGEKVRVGSAGKSERSMATVRSMGDSKGRNMDKSSSSEEDNVNSDDTTYKEGESKEESYISERSDSSETSGSSGSGSESGEEMEISQRSESSDDSVVEVKRKGERGRAQSSESSDDGGVEVKRKEEMGGEESESSDCPESSENLISCEGTGGRLERGEEVVSENLERKKSEKEVKGNSVQSGLRKEMYGANHLVDVKEEVEEENEEEVVSGVSRKLKKAEEEKRKSVKAALKRKKACESGISAGDLGLKPDFVASRTRSNEGSRSKRSSMEKGTIADPVCLDDDDDDDCENFTSKTGFGTDTNFPVLEIKEECGSSSSTKKARFEEEEICEKDVPLGNKDSNGEDGLESSKRVSKVVGKNLDVINVLLDSISKEAPLKEEFSSSMELEDEEGPSPPSQPGVIYLPLKFPSDLYAKPDEEEEDVQADELDPLWAEFEFGLRSREMDSVKNDEVSRAGLCRKILQIISLTNGRVTISRGLIWLIELLVEKEDILPQEVEADQATSCRRGDHELILDEEIGLICKCCTHIEHEIRDMALEFAPIPYGKSTRRCSGMLDPLNFDDLNQDPNADSSHGSKPIGAGTVWDIIPRVKNNMFEHQREGFEFLWKNIGGSIHLDKLQEKKNFDSGSGCIISHAPGTGKTRLTIVFLQSYMEFYPKCHPLIIAPKSMLLTWEEELQKWNFDIPFHNLNKTKLSGKEDARAVNCLPKDGRTDDNSNRKVKLCSWLMSKSILGISYPLFQQLVEEQGNFRFQELSAKQKLKSEMRKILLERPGVLVLDEGHIPRNDDSLIWCALTKMKTEKRIILSGTPFQNNFTELYNTLCLVRPTFSNMNFPKSEERSVKRRGRKTSSRSRGKWESLTNLIGKSDNDYLHDSKLQKLREMIEPFVHIHRGNILQEKLPGLRNSVVILKPADLQKELLLKIKAMKNAFELDHVESMISVHPSLLLDCKVDLHADEALLEKLKSQAEAGAKTKFLIELIGLSEALNEKVLVFSQYLGPLCFIKGILESSFGWTEGNEVIRMEGKDELKKRQDFINTFNDACSKVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKFVYVYHLITSGTREEDKYCRQVEKDRISNLVFSAPSSGRDIMQKVLDDKILEAMRESKILEGMIENILDQSKESDLVNNFGLVEDRRM 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2740923 2745311 - Conep08aG0045400.1 Cone8ag0437 442986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0437 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 877 IPR027417 -
Cone8ag0437 1228 Coils Coil 11 39 - -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 24 334 - -
Cone8ag0437 1228 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1213 IPR044567 GO:0080188(InterPro)
Cone8ag0437 1228 Pfam Helicase conserved C-terminal domain 1019 1137 IPR001650 -
Cone8ag0437 1228 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1002 1182 IPR001650 -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 24 39 - -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 364 400 - -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 76 113 - -
Cone8ag0437 1228 SMART helicmild6 1048 1137 IPR001650 -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 202 229 - -
Cone8ag0437 1228 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 670 875 IPR014001 -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 133 181 - -
Cone8ag0437 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1174 IPR027417 -
Cone8ag0437 1228 CDD SF2_C_SNF 1018 1148 IPR049730 -
Cone8ag0437 1228 Gene3D - 624 913 IPR038718 -
Cone8ag0437 1228 Coils Coil 252 272 - -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 257 289 - -
Cone8ag0437 1228 Pfam SNF2-related domain 646 984 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cone8ag0437 1228 Gene3D - 948 1218 IPR027417 -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 114 132 - -
Cone8ag0437 1228 SMART ultradead3 639 886 IPR014001 -
Cone8ag0437 1228 MobiDBLite consensus disorder prediction 430 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0437 K10875 - - csv:105435045 768.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0437 Cone-Chr8:2740923 Cone8ag1217 Cone-Chr8:10310671 1.54E-87 dispersed
Cone5ag0170 Cone-Chr5:706880 Cone8ag0437 Cone-Chr8:2740923 1.30E-100 transposed
Cone12ag0422 Cone-Chr12:2511124 Cone8ag0437 Cone-Chr8:2740923 4.99E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46649 PF07714 PK_Tyr_Ser-Thr 1.80E-10 CL0016 Cone TR