Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0446 ATGGATTCTCAGCAGAACAATCTCTTCGAGACGGCTTCTCAGCCCGACACGGGCAACGATGCGTACACTTTTCTCGAATTCAATACCCAGGGAGAAGGCTTCGACTATCCTGAGTTTCCAGACCCGATCAGGTCTCCTGTGGCATGGCCAACGCCGTCAGATTCGTTGGCTGATTCCACCGAACGAGGTGGCAGTGGTGGCGGAGGGTCGGATCATCATTCTGATACCTCGCCGGCTGCCCCAGGCAGTGGTGCCAAGGGTCGGGTAGGTGGTTCAGGCATTAGTAGTGGGAATAATCAGGTTGTTGATGCCCTAGCGGCTGGGATGAGCGGCTTGAACTTTGAAGATACTGGCGATGATGAGAATAATGAGTTTGGTAAGGGGGATTTTACAGAACATGCGTGTAGGTATTGTGGCGTTTCGAATCCGGCATGTGTGGTGAGGTGTAATGTGCCGTCTTGCCGTAAGTGGTTCTGTAATTCGAGGGGGAACACGTCTGGGTCCCACATTGTGAATCATCTGGTTCGAGCAAAACACAAAGAAGTCTGTCTTCATAAGGACAGTCCTCTGGGAGAAACAATTCTTGAATGTTACAATTGTGGATGCCGGAATGTGTTTCTTCTTGGATTTATTTCCGCCAAAACAGAAAGTGTGGTAGTTCTTCTTTGTAGGGAACCTTGTTTAAGTGTTAATGCATTGAAGGACATGAATTGGGATCTCAGCCAGTGGTGCCCCCTGATTGATGATCGGTGTTTTCTTCAGTGGCTTGTTAAGGTTCCATCAGAGCAAGAGCAGTTGAGGGCACGGCAGATAAGTGCCCAACAAATTAATAAGGTGGAAGAACTCTGGAAGACAAATCCCGATGCTTCCCTCGAGGACCTTGAAAAGCCTGGTGTGGATGATGAACCTCAACCTGTAGCATTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCTCCCCTTATCAAGCTCGAAGCTGACTATAACAAAGTGATGAAAGAGTCTCAGAGCAAGGACAATGTCACAATCCGGTGGGATGTTGGTCTTAACAAGAAGCGCATTGCATATTTTGTCTTTCCAAAGGAGGACAATGAGCTACGACTTGTACCGGGAGACGAGTTGCGGCTTCGTTATTCTGGTGATGCAGCTCATCCAGCATGGCAGTCAGTGGGTCATGTGATCAAGCTAACTGCACAGGAAGAGGTGGTGCTTGAACTCCGTGCCAGTCAGGGAGTTCCAGTTGATGTCAACCATGGTTTCAGTGTTGATTTTGTGTGGAAGAGTACAAGCTTTGATCGGATGCAAGGAGCAATGAAAACTTTTGCAGTGGATGAGACTAGTGTTAGTGGTTATATCTATCACCACTTATTGGGACATGAAGTAGAGGTGCAGATGGTTCGTAACACACTACCTCGGCGTTTTGGTGCACCTGGCCTTCCAGAGCTCAACGCATCCCAAGTTTTTGCAGTAAAGAGTGTCCTTCAGAAGCCTATTAGTTTGATTCAAGGTCCACCTGGCACAGGGAAGACTGTAACTTCAGCAGCCATAGTGTATCACATGGCCAAACAAGGCCAGGGTCAGGTTTTGGTTTGTGCCCCTAGTAACGTTGCAGTAGACCAACTTGCTGAAAAGATAAGTTCCACTGGTCTAAAGGTTGTTCGGCTTTGTGCCAAATCAAGGGAAGCTGTAAGTTCACCTGTTGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACGTCAGAAAAGAGTGAGCTTCACAAGTTGCAGCTGCTGAAAGATGAACAAGGAGAGTTGTCCAGCAGTGATGGGAAAAAATACAAAGCACTGAAACGTGCAACAGAGAGGGATATTTCTCAGAGTGCTGATGTCATTTGTTGCACATGTGTCGGTGCTGGAGATCCTCGGCTGTCAAATTTTAGATTTCGCCAGGTTCTTATTGACGAGTCTACACAAGCAACAGAGCCTGAATGTCTTATTCCCCTCGTTCTTGGGGCAAAGCAGCTTGTTCTTGTTGGTGACCATTGCCAACTTGGTCCTGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGACTGGCGCAGTCCCTCTTTGAGCGTCTTGTTCTTCTTGGGGTTAAGCCAATTAGATTGCAGGTGCAATATCGCATGCACCCATCTCTGTCTGAATTTCCATCTAATAGCTTTTACGAAGGTACTCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATTGACAGGCATTGATTTCCCTTGGCCTGTTCCCAACCGTCCTATGTTCTTCTATGTTCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACATCATATCTAAATAGGACTGAGGCTGCAAATGTCGAAAAGATTGTAACTACTTTCTTAAGGAGTGGTGTTGTTCCTAATCAGATTGGTGTGATAACACCATATGAGGGGCAACGAGCTTACATTGTGAACTACATGTCAAGGAATGGTTCTCTCAGACAGCAACTCTACAAGGAAATTGAGGTTGCAAGTGTGGATTCCTTTCAAGGAAGGGAAAAGGATTATATCATTTTGTCTTGTGTGAGGAGTAACGAACATCAGGGTATTGGATTCCTTAATGATCCTCGAAGGCTTAACGTTGCTCTGACACGTGCTCGATATGGTATTGTCATTCTGGGAAACCCCAAAGTTCTTAGCAAACAGCCATTGTGGAATAGCCTGTTGACACACTATAAGGAACACGAGTGCTTGGTTGAAGGGCCTCTAAATAACCTGAAACAGAGTATGGTACAGTTTCAGAAACCAAAAAAGATCTATAATGATCGGAGACTTTTCTTCGGTGTTGGGCCTGGAGTGATGCCTAATGATAGTTTTGCATCATCAGCGTCTGGTCCAAATACTGATCGCAGAAGCAATCGTGGTAGAGGTTCCTATATACCTCCTGGGCCACCCAATGGTAATCACAAGCCTGGGTCGCATCCTTCTGGGTATCCTATGCCACGAGTCCCCGTTCCACCATTTCATGGTGGTCCCGCCTCTCAACCATATTCTATTCCCACACGTGTAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTCCCTCAACCAGGAAGTAGGGGTTTTGGGGCCGGACAAAGAAGTGCTGGAGCCCCTATTGGAAGTCATCTTCAACACCAGCAAGGCACCCAGCAACCCACTGGAAATCTTGGTTCTACTTTCAACTTCCCTAATTTGGAGAATCCTAATAGCCAGCCATCTGTGGGTGGTCCATTATCTCAACCTGGATTCGTGAACAATATGCCAGTTCAAGGGCCGAGCCAAACATTTCGTGATGGGTTCTCTATGGGGGGCATGTCTCAGGATTTCTTGGGTGATGATTTCAAAAGTCAGGGATCTCATGTTCCTTATAATGTTACTGACTTCTCCACACAGGCTTCTCAAAGTGGGTATGGCGTTGATTATGTTACCCAAGGAGCACAAGGCGGGTTTCCTGGGAATTTTCTGAACCAGAATTCTCAAGCTGGATATTCCCGTTTTGGAGCCGGCAATGATTTTATGTCTCAGGATTACATGGCTCATGGTTCACAAGGATTATTCACCCAAGTTGGTTTTAATGACCCCTTGCAAGATGATGCCTCACAAAGCCACTTTGGTATGGCTAATGCCAATCCGCTTCAATCTCAGGGATTGATGAACTCTCTCTACTCTCAGCCTTTTGCCCATTACAACTCTCAGCCACCAAACTTGCAGTCCCCGCAACAGCATTCTCAGCCGGGTCCCAGTGCCTCAAATCAGAAGATACACTACACTGGTTGA 3807 46.57 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEGFDYPEFPDPIRSPVAWPTPSDSLADSTERGGSGGGGSDHHSDTSPAAPGSGAKGRVGGSGISSGNNQVVDALAAGMSGLNFEDTGDDENNEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYNKVMKESQSKDNVTIRWDVGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVVLELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSSSDGKKYKALKRATERDISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQLVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGVGPGVMPNDSFASSASGPNTDRRSNRGRGSYIPPGPPNGNHKPGSHPSGYPMPRVPVPPFHGGPASQPYSIPTRVAVHGPVGAVPHVPQPGSRGFGAGQRSAGAPIGSHLQHQQGTQQPTGNLGSTFNFPNLENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYGVDYVTQGAQGGFPGNFLNQNSQAGYSRFGAGNDFMSQDYMAHGSQGLFTQVGFNDPLQDDASQSHFGMANANPLQSQGLMNSLYSQPFAHYNSQPPNLQSPQQHSQPGPSASNQKIHYTG 1268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2827246 2838085 - Conep08aG0046300.1 Cone8ag0446 442995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 992 1008 - -
Cone8ag0446 1268 Pfam RNA helicase (UPF2 interacting domain) 133 286 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cone8ag0446 1268 CDD SF1_C_Upf1 719 908 IPR047187 -
Cone8ag0446 1268 Pfam AAA domain 695 891 IPR041679 -
Cone8ag0446 1268 Gene3D - 718 929 IPR027417 -
Cone8ag0446 1268 CDD 1B_UPF1-like 339 426 IPR040812 -
Cone8ag0446 1268 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 127 286 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cone8ag0446 1268 PANTHER DNA2/NAM7 HELICASE FAMILY 135 1021 IPR045055 GO:0000184(PANTHER)|GO:0003724(PANTHER)|GO:0005737(PANTHER)
Cone8ag0446 1268 Pfam RNA helicase UPF1, 1B domain 338 427 IPR040812 -
Cone8ag0446 1268 Gene3D - 339 427 - -
Cone8ag0446 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 624 IPR014001 -
Cone8ag0446 1268 Gene3D - 447 717 IPR027417 -
Cone8ag0446 1268 FunFam regulator of nonsense transcripts 1 homolog 339 427 - -
Cone8ag0446 1268 CDD ZBD_UPF1-like 134 256 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 1 26 - -
Cone8ag0446 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 913 IPR027417 -
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 952 1089 - -
Cone8ag0446 1268 CDD DEXXQc_UPF1 483 718 - -
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 1235 1268 - -
Cone8ag0446 1268 Pfam Type III restriction enzyme, res subunit 483 553 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 1 96 - -
Cone8ag0446 1268 FunFam Regulator of nonsense transcripts 1 718 929 - -
Cone8ag0446 1268 Gene3D - 569 623 - -
Cone8ag0446 1268 Pfam AAA domain 590 686 IPR041677 GO:0004386(InterPro)
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 1049 1089 - -
Cone8ag0446 1268 MobiDBLite consensus disorder prediction 952 969 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0446 K14326 - - mdm:103409468 2357.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0560 Cone-Chr13:5799945 Cone8ag0446 Cone-Chr8:2827246 9.27E-51 dispersed
Cone15ag0915 Cone-Chr15:7185652 Cone8ag0446 Cone-Chr8:2827246 8.07E-55 dispersed
Cone4ag1352 Cone-Chr4:11020297 Cone8ag0446 Cone-Chr8:2827246 1.53E-42 dispersed
Cone7ag0441 Cone-Chr7:1981596 Cone8ag0446 Cone-Chr8:2827246 1.08E-31 dispersed
Cone7ag1580 Cone-Chr7:10823551 Cone8ag0446 Cone-Chr8:2827246 3.69E-40 dispersed
Cone14ag0862 Cone-Chr14:5477524 Cone8ag0446 Cone-Chr8:2827246 1.84E-47 transposed
Cone12ag0435 Cone-Chr12:2583821 Cone8ag0446 Cone-Chr8:2827246 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40