Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0466 ATGGCCGGTTTAAATTTATGCAATCAATACCTCCACTGTCTTCCCCTTCCTTCTAATCAACAACTGCAGCACATACCCGACTCAGAAGATCATCAACCTGATGATGCTAACCGTGGATCCCACCGCCGTACACGTGGCAGACCGTCTGGCTCAAAAAACAAACCAAAACCACCCGTCATCGTCACTAGAGAGAGCGCTAACACTCTCCGCGCTCACATCCTCGAAGTATCGGACGGCAGCGATGTGTTCGAGAGCATGTCGATCTTTGCACGCCGCCGTCAGCGTGGCATCTGCGTACTGAGCGGGAGTGGGACCGTCACGAACGTCAGCTTACGTCAGCCAGCGGCAAGCGAAACCGTAGCGACTCTTCAAGGGAGGTTCGAGATATTATCTCTCTCCGGTTCGTTTCTGCCCCAGCCCGCCCCGCCCGGGGCAACGAGTTTGACAATTTATTTAAGCGGCGGGCGGGGGCAGGTAGTTGGGGGCAGCGTGGTAGGAGAGTTGATAGCCTCCGGTCCGGTTATTGTCATAGCGGCATCGTTTACGAATGTGGCGTATGAGAGACTGCCTTTGGATGAACAAGATCACGACGACCTATCGCAAATACAGGCGGGTCAAGGCCATGTAATGGGTGGCCGTAACGGATTAATGCAAAATGGAGTTAATTCAGGGCTAGGGTTTCTGAACATGCCAATCGGTAGTAATAGTAATAATAATTTGCAGAATGATCAGCTGCAGGTTGATGGGTGGGGGCATAATAGTAATTCTTCAGGGGTTTGGAATAGCACTACTTCTACTACTCCATTTTGA 810 51.48 MAGLNLCNQYLHCLPLPSNQQLQHIPDSEDHQPDDANRGSHRRTRGRPSGSKNKPKPPVIVTRESANTLRAHILEVSDGSDVFESMSIFARRRQRGICVLSGSGTVTNVSLRQPAASETVATLQGRFEILSLSGSFLPQPAPPGATSLTIYLSGGRGQVVGGSVVGELIASGPVIVIAASFTNVAYERLPLDEQDHDDLSQIQAGQGHVMGGRNGLMQNGVNSGLGFLNMPIGSNSNNNLQNDQLQVDGWGHNSNSSGVWNSTTSTTPF 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3052220 3053167 + Conep08aG0048700.1 Cone8ag0466 443015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0466 269 ProSiteProfiles PPC domain profile profile. 66 203 IPR005175 -
Cone8ag0466 269 MobiDBLite consensus disorder prediction 27 42 - -
Cone8ag0466 269 FunFam AT-hook motif nuclear-localized protein 69 196 - -
Cone8ag0466 269 Gene3D - 69 210 - -
Cone8ag0466 269 CDD DUF296 70 153 IPR005175 -
Cone8ag0466 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 196 - -
Cone8ag0466 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 223 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone8ag0466 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 70 182 IPR005175 -
Cone8ag0466 269 MobiDBLite consensus disorder prediction 22 59 - -
Cone8ag0466 269 PIRSF ESCAROLA 15 264 IPR014476 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0469 Cone-Chr4:2073441 Cone8ag0466 Cone-Chr8:3052220 8.26E-91 dispersed
Cone7ag0306 Cone-Chr7:1330720 Cone8ag0466 Cone-Chr8:3052220 5.76E-23 dispersed
Cone7ag0452 Cone-Chr7:2047086 Cone8ag0466 Cone-Chr8:3052220 1.08E-92 dispersed
Cone8ag0466 Cone-Chr8:3052220 Cone9ag0727 Cone-Chr9:3470444 2.40E-75 dispersed
Cone8ag0466 Cone-Chr8:3052220 Cone8ag0467 Cone-Chr8:3054867 1.61E-17 tandem
Cone12ag0459 Cone-Chr12:2872632 Cone8ag0466 Cone-Chr8:3052220 1.11E-157 wgd
Cone14ag0306 Cone-Chr14:1406920 Cone8ag0466 Cone-Chr8:3052220 1.91E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0466 - - - 0.0