Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0467 | ATGGATTCACGAGACGGTCCGCCTCCGCCATTATCAGCGACGAACATGATGGTGGGGCCCAATTCGTACCCTAACAATTCGAGCGCGTCTCAGATGTTTCCGCCTCCGACATCTAGATTTCCGTTCAACTCCTCTGCATCTAAGCCTCTGGATTATGACGGATCGTCGTCTGGTGGGTTTAACGCTGATTCGGGGAAGAGAAGGAGAGGTCGACCGAGAAAGTACTCGCCTGATGGTAACATTGCTTTGGGATTGACGCCTACTCCGCCTCCGCCTATTTCTTCTTCTTCTGGGGTGGTCGGCCATGGGGATTCAGGTGGCACCCCATCATCTGAGCCGACCGTGAAGAAGCACAGGGGAAGACCTCCTGGGTCTGGAAAGAAGCAAATGGACGCTCTAGGGGCTGGTGGAGTTGGGTTTACTCCTCATGTTATTCTGGTGAAACCAGGAGAGTATGCTTATGGGGTTTGCAAGGACATAGCGTCAAAGATTACATCTTTCTCACAGCAAGGGCCTCGTACAGTTTGTATTCTATCTGCAAATGGTGCTGTCTCCAATGTTTCCCTTTGCCAACCAGCAATGTCAGGAGGGACCATTACATATGAGGGACGATACGAGATCATCTCTCTCACAGGCTCCTACTTGCTCTCAGAGAGTAATGGAAATCGAAGCCGAACTGGTGGCTTGAGTGTTTCCCTGGCGGGGTCAGATGGCCGCGTTCTTGGCGGTGGAGTTGCGGGAATGCTCGTTGCATCATCTCTTGTTCAGGTCATTGTGGGTAGCTTCATTGAAGATGAGAGAAAGCCGATTGAACATGTAATTAGATCTGGGACTTCTTCCATGCCATCTCAAACGATTAGCTTTGGGACCCCCCCTGTCACGGCACCTAGCCCTTCCTCTCAAGGGGCATCAAGTGACTCGTCCGATGGAGATGGCAATGATAATCGCTCCCTTAATATGGGCCCCAGCGGACTCTACAGTAATCCCGGTCAAGCACTTCATAATATGAATATGTACCACCATCTATGGGCTGGTCAAACACAATAG | 1047 | 51.0 | MDSRDGPPPPLSATNMMVGPNSYPNNSSASQMFPPPTSRFPFNSSASKPLDYDGSSSGGFNADSGKRRRGRPRKYSPDGNIALGLTPTPPPPISSSSGVVGHGDSGGTPSSEPTVKKHRGRPPGSGKKQMDALGAGGVGFTPHVILVKPGEYAYGVCKDIASKITSFSQQGPRTVCILSANGAVSNVSLCQPAMSGGTITYEGRYEIISLTGSYLLSESNGNRSRTGGLSVSLAGSDGRVLGGGVAGMLVASSLVQVIVGSFIEDERKPIEHVIRSGTSSMPSQTISFGTPPVTAPSPSSQGASSDSSDGDGNDNRSLNMGPSGLYSNPGQALHNMNMYHHLWAGQTQ | 348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3054867 | 3060969 | - | Conep08aG0048800.1 | Cone8ag0467 | 443016 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0467 | 348 | MobiDBLite | consensus disorder prediction | 15 | 62 | - | - | |
| Cone8ag0467 | 348 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 158 | 263 | IPR005175 | - | |
| Cone8ag0467 | 348 | Gene3D | - | 143 | 275 | - | - | |
| Cone8ag0467 | 348 | ProSiteProfiles | PPC domain profile profile. | 136 | 284 | IPR005175 | - | |
| Cone8ag0467 | 348 | MobiDBLite | consensus disorder prediction | 276 | 329 | - | - | |
| Cone8ag0467 | 348 | MobiDBLite | consensus disorder prediction | 275 | 329 | - | - | |
| Cone8ag0467 | 348 | CDD | DUF296 | 141 | 262 | IPR005175 | - | |
| Cone8ag0467 | 348 | MobiDBLite | consensus disorder prediction | 1 | 130 | - | - | |
| Cone8ag0467 | 348 | MobiDBLite | consensus disorder prediction | 98 | 112 | - | - | |
| Cone8ag0467 | 348 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 140 | 264 | - | - | |
| Cone8ag0467 | 348 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 15 | 313 | IPR039605 | GO:0003680(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0461 | Cone-Chr12:2893829 | Cone8ag0467 | Cone-Chr8:3054867 | 8.31E-207 | dispersed | |
| Cone17ag1478 | Cone-Chr17:9974559 | Cone8ag0467 | Cone-Chr8:3054867 | 3.29E-69 | dispersed | |
| Cone8ag0467 | Cone-Chr8:3054867 | Cone9ag0724 | Cone-Chr9:3455326 | 9.48E-53 | dispersed | |
| Cone8ag0466 | Cone-Chr8:3052220 | Cone8ag0467 | Cone-Chr8:3054867 | 1.61E-17 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0467 | - | - | - | 0.0 |