Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0471 ATGATCGACTACCGAATATCTCCACCGCCACCACAACAGCCGGAAACAACCGCCATGAATCTCTGGACAGACGAGAACGCCTCCGTCATGGAAGCTTTCATGAGCTCAGATCTCGCTTCCCTCTGGGCATCTTCTTCTTCTTCAGCTCAACCTCCTCAATCTCAGCCGCAACCAGGTCCTCCATCCGCTGCTTCTATCAGTAATCCTGCAGTCGACCACACAAAATCTCTCCTTCCTCAATCCCAGCAGCCGCCGTCCGTCACTCTCCTCAACCAAGACACTCTCCAGCAACGCCTCCAAGCCCTTATCGACAATTCACGTGAGATCTGGACCTACGCCATCTTCTGGCAGTTCAATTACGACGACTCAGCCGACTCCGTGTCCGCCTTAGGCTGGGGCGACGGTTACTACAAAGGCGAAGATCCGAATAAAGCCAAGGGCAAATCCGTCCAAACAGCCTTGGCTGTCACGTCAGCAGCCGAGCAAGAGCACCGGAAAAAAGTGCTCCGTGAACTAAACTCTCTGATTTCTGGCACCGCCGTCGAAGACGTCGTCGACGAGGTGGTTACAGACACCGAGTGGTTCTTCCTCGTCTCAATGACTCAATCGTTCGCCAACGGAGCCGGTTTACCAGGTCAGGCTTTTGTGAGTTCCGTCCCGGCTTGGATTTCCGGTCCGAATCGGCTTTCTAACTCCCACTGCGAACGTGTTCGTCAGGCTCAGGTTTACGGCCTACAGACAATGGTCTGTATTCCGGTAACTAACGGCGTCGTCGAGTTAGGATCGACAGAGATGATTGCTCAAAGCTCCGATCTGATGAACAAGGTTAGGGTGTTGTTCAATTTCAATAATCGCGACGTGGCTCACTCCTGGCCGTTGAACGGCCCTGATCAGGAAGAGACTGATCCGACGTCGTTTTGGATCAGCGGCCCTTCAACCACCACAGAAATCAAAGACTCTGCAAATAACAATAGCAATGAAAATTCCATCCCATCTGCTTCAATTCTTAGTCAAACTCCTCCACTGATTTCAAGGCAAACCCATTTCGAGAACCCTAGATCTAGTAGCAATCCTTTAACCCATATCCATAACCAAACCTACTTCTCGAGAGAATTAAACTTCTCAGAATATGGGTTTGAAGGAAATAGTACAGGAAAGAACTTGAATTCAAATCCGAATTCATTGAAGCTGGAATCGGGTGAAATTCTCAATTTTGGGGAGACTAATAAGAGGAGTAGTGTTTATCCAAATGCGAATTTGTTTTCTAATCATTCTCCAATCATCATAGAAGACAATAAGAACAACAGCAACAACAACAACGGCAACAAGAAGAAAAGATCCCCTACTTCTCTCGGCAGCAATGAAGATGGGATGCTTTCATTTACATCCCATATGATCAAATCGAATGGTGGGGTCGGTGGCGATTCCGACCATTCAGATTTTGAAGCTTCCGTGGTCAGAGAAGCAGAGGATAGTAGTAGAGTAGTAGAGCCAGAGAAAAGGCCAAGGAAAAGAGGTAGAAAGCCTGCAAATGGTAGAGAAGAGCCGTTAAACCATGTCGAGGCGGAAAGACAGAGGAGAGAGAAGCTCAATCAAAGATTCTATGCTCTAAGAGCAGTAGTCCCTAACGTGTCGAAAATGGATAAAGCTTCTCTCTTAGGAGACGCTATTTCTTACATAAACGAGCTTAAGGAGAAGCTTCAAAGCAACGAAATGGAAAAGGAAGAGTTAGAGAAACAGGTGGAGGCCATGAAGAAGGATTTAGGTGGAAGTAATACTGATCCGCTGCATTGTTCTGATCAAGACATGAAGATTTCAAAGCAGGGAGGGCTGAAATTGATTGAGATGGATATTGATGTAAAGATAATTGGATGGGATGCTATGATTAGGATTCAGTGTAGTAAGAAGAACCATCCAGCTGCTAGATTGATGGGTGCTTTGAAAGTGCTTGATTTGGAAGTTCATCATGCTAGTGTTTCTGTTGTCAATGATTTGATGATCCAACAAGCGACGGTGAATATGGGTACTCGGTTTTATAGCCCGGAGCAGCTTAGAATGGCCCTTTCTGCTGAAATTAATGGTGGTGTATAA 2091 46.58 MIDYRISPPPPQQPETTAMNLWTDENASVMEAFMSSDLASLWASSSSSAQPPQSQPQPGPPSAASISNPAVDHTKSLLPQSQQPPSVTLLNQDTLQQRLQALIDNSREIWTYAIFWQFNYDDSADSVSALGWGDGYYKGEDPNKAKGKSVQTALAVTSAAEQEHRKKVLRELNSLISGTAVEDVVDEVVTDTEWFFLVSMTQSFANGAGLPGQAFVSSVPAWISGPNRLSNSHCERVRQAQVYGLQTMVCIPVTNGVVELGSTEMIAQSSDLMNKVRVLFNFNNRDVAHSWPLNGPDQEETDPTSFWISGPSTTTEIKDSANNNSNENSIPSASILSQTPPLISRQTHFENPRSSSNPLTHIHNQTYFSRELNFSEYGFEGNSTGKNLNSNPNSLKLESGEILNFGETNKRSSVYPNANLFSNHSPIIIEDNKNNSNNNNGNKKKRSPTSLGSNEDGMLSFTSHMIKSNGGVGGDSDHSDFEASVVREAEDSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKEKLQSNEMEKEELEKQVEAMKKDLGGSNTDPLHCSDQDMKISKQGGLKLIEMDIDVKIIGWDAMIRIQCSKKNHPAARLMGALKVLDLEVHHASVSVVNDLMIQQATVNMGTRFYSPEQLRMALSAEINGGV 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3119283 3121785 - Conep08aG0049200.1 Cone8ag0471 443020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0471 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 517 583 IPR036638 GO:0046983(InterPro)
Cone8ag0471 696 MobiDBLite consensus disorder prediction 67 86 - -
Cone8ag0471 696 Pfam Helix-loop-helix DNA-binding domain 518 564 IPR011598 GO:0046983(InterPro)
Cone8ag0471 696 CDD bHLH_AtAIB_like 511 586 - -
Cone8ag0471 696 MobiDBLite consensus disorder prediction 429 458 - -
Cone8ag0471 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 514 563 IPR011598 GO:0046983(InterPro)
Cone8ag0471 696 Gene3D - 513 590 IPR036638 GO:0046983(InterPro)
Cone8ag0471 696 PANTHER MYC 81 690 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cone8ag0471 696 MobiDBLite consensus disorder prediction 311 337 - -
Cone8ag0471 696 MobiDBLite consensus disorder prediction 485 524 - -
Cone8ag0471 696 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 95 280 IPR025610 -
Cone8ag0471 696 Pfam Plant bHLH transcription factor, ACT-like domain 618 687 IPR054502 -
Cone8ag0471 696 SMART finulus 520 569 IPR011598 GO:0046983(InterPro)
Cone8ag0471 696 Coils Coil 560 594 - -
Cone8ag0471 696 FunFam Transcription factor bHLH13 507 581 - -
Cone8ag0471 696 MobiDBLite consensus disorder prediction 43 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0483 Cone-Chr15:2297207 Cone8ag0471 Cone-Chr8:3119283 2.12E-51 dispersed
Cone15ag0484 Cone-Chr15:2302489 Cone8ag0471 Cone-Chr8:3119283 1.92E-78 dispersed
Cone18ag1010 Cone-Chr18:7488601 Cone8ag0471 Cone-Chr8:3119283 3.74E-59 dispersed
Cone1ag0497 Cone-Chr1:4842772 Cone8ag0471 Cone-Chr8:3119283 1.02E-13 dispersed
Cone4ag1118 Cone-Chr4:9647855 Cone8ag0471 Cone-Chr8:3119283 1.92E-30 dispersed
Cone5ag1262 Cone-Chr5:6012846 Cone8ag0471 Cone-Chr8:3119283 1.89E-09 dispersed
Cone6ag0782 Cone-Chr6:3984304 Cone8ag0471 Cone-Chr8:3119283 1.05E-25 dispersed
Cone7ag1014 Cone-Chr7:7847175 Cone8ag0471 Cone-Chr8:3119283 2.38E-31 dispersed
Cone8ag0471 Cone-Chr8:3119283 Cone8ag1047 Cone-Chr8:9609525 6.86E-15 dispersed
Cone12ag0465 Cone-Chr12:2953872 Cone8ag0471 Cone-Chr8:3119283 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46653 PF01486 K-box 2.00E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0471 K13422 - vvi:100250607 753.051