Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0473 ATGGAAGACTTTCGTGAAAATAGGCCCGATCCTTCCGATTCAGTTGTACTAGAGAAAGAATATCGTGGATCTTCGTCATTTTCGCAGTCTGAAACCCCAGGAGACAAGTTCTTGATTTCTTCTTGGGCGAAAGGTGATGGATCCTTGCCGGATTCTGACTCGATGATTGTCGGTGATTGTCCTTTGGTCACTTCGGTTTCTGAATTGAACAAGTCTGATACGGATTTGTTTAAGGTAGTTTCGGAAATTTCGACTTGTTTTCCTCTCCCTAGAGATACATTGGATGGCGCTTTGCCTTCTTCGCAAATGGAAACCCTAGATGATCAGCTTCTTCCAACTTTGAGAACTGACGTCCTTGATGAAATGTCAGACTCGTTGTTCGGTGATTGTGAAGACACGCCAAAAAGAGAGGCATCGACATCTTCTCCCTTTGATTTTCACGGAAACAATCCATCAGATAGCTCAAATTCTTTGAATTCATTCGTTTCCGACCAAATTAGGGATTCTTCCATAAATTTAATTTCTCTACAGGGAATAGCTCCCTCTCCAGTGGGTGCAGGGCTGGACAATCTAAGGAATACATGTTTTATGAATGCTATTCTCCAGTGCTTTACACATGCTGTGCCCCTGGTTCAAGCGCTTTCTTCTTCCAGTCATAAAAATTGCTATGATGGTCTTGGTGAAGATTTCTGCGTGTTTTGTGCTCTCCGTAGCCTTGTTCAACTTTCACTAGCTTCTCCTGGACGGGTTATCTCACCTTATAAACTGGCCAACAACTTGAATTACTTTTCATCTGCTTTCCAGAGATTTCAGCAGGAAGATGCTCATGAATTTTTGCAGTGCTTCTTAGATAAGCTTGGAAAATTCTGTCTTGATTCAAAGGCAGATGATAATATAGTGGAAAAGGTGTTTGGTGGTCGTCTTATAAGCAAACTTCGATGCTGCAGTTGTGGTCATTCTTCTGACACTCAGGAACCTCTGATTGACCTGAGTTTGGAGATCGAAAATGTGGACTCACTTTCAAGTGCTTTGGAATCTTTCACCAAGGTTGAACGGATTGAAGATGCTGAGACAAAATTTACATGTGAGAACTGCAAAGATGAGGTTTCTATGGAGAAACAACTTCTTCTGGACACAACTCCATCCGTTGCTACTTTCCAGTTGAAGAGATTTAAGGTTGATGGTTGTTATGTTGAAAAAATTGACAAGCATGTGGAATTCCCATTGGAGCTAGACATGAAGCCTTACACTACTGGGAACCAGGATTCAAATGTTGAGTTGAAGTATGAACTGTATGCTATTGTGGAACATAGTGGATTTTCATCTACTTCTGGTCATTACTTTAGCTTTATTCGTTCTTCTCCAGATAGCTGGTACAGATTGGATGACTCAAAGGTATCTAGGATTACAGAAGATTTCGTCCTCTCTCGGGATGCCTACATTCTGTTCTATGTCAAGCAGGGAACACCTTGGCTTTCAAACTTAATAGCACCACCAAAACTATTATCAACCGAAGCTTTGTCTACCTCACCCAAGTCGGTCTTAGACAACACAGGCTGTAACAATGTTAATGAACCCATGAATTATTATTCATCACAAACTCTTGGACCAAGAACTTTTGGTGTAGAGGTAAGTGAGTCTAGAGTTTTTGCTGGTCCCCTTTATGAACAGTTCTGTCAATCACAACCGGACGACCGCAATGGAGATGGCTCTAGAATTGATACTCCTTCCCTTGATGTTTCTTCACCTGCCATTGGCCTTAACAAGAATTTACATGATAAATCCTCTCGTGGAGACAATAAATTCCATAAGAGGGGAATTAATAAGAGTGAAGATGATGATGGTTTTTGTCCACTAACTCCACCCAGATCCCCAAGTCCAGATATTATATCAATGGAGGCTCCAGGAACAGGATATAAAATCCCTCGTGATCATTTAAAAGCAGCGAAAAGATCAAAGGCTGAAAAGCAGCCATCATTAGACAAGACTTTGGTGGAGGATCCAGAGAGAAGAGAAGCTCTTAGGTATGCTTCAAAGAGCATGCCTAGTTCTAGACGCTCGAAACTTATGGCTGCTATGCTTGGATCCCAGAGTGAAGGCCCTCACATCAACAATAAGAAGAAGATGATGGCGGGACCTGCTTTTACTCGGAATACTCATCCCAAGCATAGCCACAGTAGCTCTGTCATGCAGTACGTGGCAGCTGAGACTTGA 2214 42.05 MEDFRENRPDPSDSVVLEKEYRGSSSFSQSETPGDKFLISSWAKGDGSLPDSDSMIVGDCPLVTSVSELNKSDTDLFKVVSEISTCFPLPRDTLDGALPSSQMETLDDQLLPTLRTDVLDEMSDSLFGDCEDTPKREASTSSPFDFHGNNPSDSSNSLNSFVSDQIRDSSINLISLQGIAPSPVGAGLDNLRNTCFMNAILQCFTHAVPLVQALSSSSHKNCYDGLGEDFCVFCALRSLVQLSLASPGRVISPYKLANNLNYFSSAFQRFQQEDAHEFLQCFLDKLGKFCLDSKADDNIVEKVFGGRLISKLRCCSCGHSSDTQEPLIDLSLEIENVDSLSSALESFTKVERIEDAETKFTCENCKDEVSMEKQLLLDTTPSVATFQLKRFKVDGCYVEKIDKHVEFPLELDMKPYTTGNQDSNVELKYELYAIVEHSGFSSTSGHYFSFIRSSPDSWYRLDDSKVSRITEDFVLSRDAYILFYVKQGTPWLSNLIAPPKLLSTEALSTSPKSVLDNTGCNNVNEPMNYYSSQTLGPRTFGVEVSESRVFAGPLYEQFCQSQPDDRNGDGSRIDTPSLDVSSPAIGLNKNLHDKSSRGDNKFHKRGINKSEDDDGFCPLTPPRSPSPDIISMEAPGTGYKIPRDHLKAAKRSKAEKQPSLDKTLVEDPERREALRYASKSMPSSRRSKLMAAMLGSQSEGPHINNKKKMMAGPAFTRNTHPKHSHSSSVMQYVAAET 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3149747 3153535 + Conep08aG0049400.1 Cone8ag0473 443022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0473 737 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 151 558 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Cone8ag0473 737 MobiDBLite consensus disorder prediction 1 33 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 125 159 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 19 33 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 592 612 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 139 159 - -
Cone8ag0473 737 SUPERFAMILY Cysteine proteinases 184 486 IPR038765 -
Cone8ag0473 737 Gene3D Cysteine proteinases 180 487 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 1 17 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 643 676 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 559 688 - -
Cone8ag0473 737 FunFam Ubiquitin carboxyl-terminal hydrolase 20 182 490 - -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 713 737 - -
Cone8ag0473 737 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 429 447 IPR018200 GO:0004843(InterPro)
Cone8ag0473 737 Pfam Ubiquitin carboxyl-terminal hydrolase 186 484 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cone8ag0473 737 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 186 487 IPR028889 -
Cone8ag0473 737 MobiDBLite consensus disorder prediction 719 737 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0473 K11855 - - vvi:104882327 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0418 Cone-Chr16:6557565 Cone8ag0473 Cone-Chr8:3149747 6.47E-70 dispersed
Cone2ag0577 Cone-Chr2:3354299 Cone8ag0473 Cone-Chr8:3149747 9.96E-71 dispersed
Cone4ag0602 Cone-Chr4:2753885 Cone8ag0473 Cone-Chr8:3149747 1.12E-67 dispersed
Cone4ag1737 Cone-Chr4:12811541 Cone8ag0473 Cone-Chr8:3149747 2.15E-39 dispersed
Cone7ag1656 Cone-Chr7:11140604 Cone8ag0473 Cone-Chr8:3149747 1.25E-40 dispersed
Cone12ag0467 Cone-Chr12:2982402 Cone8ag0473 Cone-Chr8:3149747 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46