Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0484 | ATGAGTTTTCAAGATATCGAGGCCGGCCGACCCTTTGCTTCATCGAGGCGAGATGTCAGTGGCAAGCAAGATCCTACTCAAGCTGTCGCGGCAGGAATATTCCAGATCAACACCGCCGTAGCTACGTTTCAGAGACTCGTTAACACCGTCGGAACGCCCAAGGACACCGTCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTACACATTGGACAACTGGTGAAGGATACTTCAGCCAGGCTCAAGCAAGCTAGTGACATTGATCACAATGCTGAGGTTAAAGCAAGCAAGAAAATTACAGATGCAAAACTTGCGAAAGATTTGCAAGCAGTCTTGAAAGACTTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATGCTCCTTTTGTTCCTCAATCTGCTCTTCCTTCTAGCTACTTGGACAGTGAGGAAGTTGTAAATTCAAATAAGAATTCACAGCGACATGCCCTCCTTATGGAGTCTAGGAGACATGAGGTGCTGCTGTTGGACAATGAAATTGCTTTCAATGAGGCGGTAATAGAGGAAAGAGAACAAGGAATTCAAGAAATTCAACAGCAAATTGGTGAAGTGAATGAAATTTTTAAAGATCTGGCTGTTCTAGTCCATGAGCAGGGAGCTATGATAGATGATATAGGATCCAACATAGAGAGCTCCCAAGCTGCGACTGCTCAGGGAATGTCCCACCTAGTAAAAGCCTCAAAGACTCAAAGATCGAATTCTTCTCTTGCCTGCTTACTATTGGTGATATTCGGGATCGTGCTTCTTATCGTGATTGTAGTGCTTGCAGCATAA | 822 | 45.5 | MSFQDIEAGRPFASSRRDVSGKQDPTQAVAAGIFQINTAVATFQRLVNTVGTPKDTVELREKLHKTRLHIGQLVKDTSARLKQASDIDHNAEVKASKKITDAKLAKDLQAVLKDFQKAQRLAAERETAYAPFVPQSALPSSYLDSEEVVNSNKNSQRHALLMESRRHEVLLLDNEIAFNEAVIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIESSQAATAQGMSHLVKASKTQRSNSSLACLLLVIFGIVLLIVIVVLAA | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3325737 | 3328582 | - | Conep08aG0050500.1 | Cone8ag0484 | 443033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0484 | 273 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 180 | 242 | IPR000727 | - | |
| Cone8ag0484 | 273 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cone8ag0484 | 273 | PANTHER | SYNTAXIN | 36 | 262 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cone8ag0484 | 273 | SMART | SynN_4 | 14 | 127 | IPR006011 | GO:0016020(InterPro) | |
| Cone8ag0484 | 273 | Gene3D | - | 15 | 133 | - | - | |
| Cone8ag0484 | 273 | FunFam | Syntaxin-22 like | 20 | 133 | - | - | |
| Cone8ag0484 | 273 | ProSitePatterns | Syntaxin / epimorphin family signature. | 186 | 225 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Cone8ag0484 | 273 | FunFam | Syntaxin-22 like | 173 | 273 | - | - | |
| Cone8ag0484 | 273 | SMART | tSNARE_6 | 175 | 242 | IPR000727 | - | |
| Cone8ag0484 | 273 | Gene3D | - | 174 | 273 | - | - | |
| Cone8ag0484 | 273 | Pfam | SNARE domain | 217 | 268 | IPR000727 | - | |
| Cone8ag0484 | 273 | SUPERFAMILY | t-snare proteins | 22 | 235 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cone8ag0484 | 273 | CDD | SNARE_Qa | 200 | 241 | - | - | |
| Cone8ag0484 | 273 | Pfam | Syntaxin-like protein | 30 | 129 | IPR006011 | GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0930 | Cone-Chr14:7509045 | Cone8ag0484 | Cone-Chr8:3325737 | 5.86E-106 | dispersed | |
| Cone15ag0918 | Cone-Chr15:7248142 | Cone8ag0484 | Cone-Chr8:3325737 | 5.46E-109 | dispersed | |
| Cone16ag1041 | Cone-Chr16:10020089 | Cone8ag0484 | Cone-Chr8:3325737 | 3.73E-77 | transposed | |
| Cone12ag0481 | Cone-Chr12:3111080 | Cone8ag0484 | Cone-Chr8:3325737 | 3.74E-161 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0484 | - | - | - | 0.0 |