Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0485 ATGGTGGAGGGAAGGATTTGTTCGGCCAAAGAGGCTAAAAATGGGATAGAGTTTCTCAAGCGGAAAAGGCTTCAGCGAATGAAGTCTCAAACTGTTGCAGAGATTATACCTGTCTCTAACATGATGGCTAGAAGCGGAGGAGATGCTTTAAAAGCTTCAGCGTCATGTGGTATGAGGCTGCTTGGTAATGCAGATTCATTGTCCTGGCCAAGTTCTTCAAATGGAAAAGATTCCTTTCCAAAGTGCAAAGTTGATAAGTTTGAAACAAGCAGTTTAGAATGGATTGAGAAGATCCCAGAGTGTCCTGTGTATCGTCCGACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAGAAGATAGCCCCAGAAGCCTCAAAATATGGCATATGCAAGATCGTTTCCCCTTTGAGTGCTTTTGTCCCTGCTGGAGTTGTCTTGATGAGGGAAAAAGCTGGGTTCAAATTCACAACTAGAGTTCAACCTCTTCGTCTTGCTGAGTGGGACACTGATGATAGGGTAACTTTTTTCATGAGTGGAAAAAATTATACATTCTGCGAGTTTGAAAAATTGGCGAACAAGGTCTTTTCTCGTAGATATTGTAGTTCTGGACGTCTTACTGCAGCATACTTGGAAAAGGAATTTTGGCAAGAAATTGCTTGTGGAAAGACAGAATCAGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCGTCTTCTCTAAGTGATGAGCTTGGGAAAAGCAAATGGAATTTGAAGAAACTTTCACGACTGCCTAAGTCCATCTTGCGTCTTTTAGAAAATGCAATCCCGGGAGTAACTGACCCCATGCTTTACATTGGGATGCTGTTTAGCATGTTTGCATGGCATGTTGAAGATCATTTTTTGTACAGTATTAACTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGCCAGGCAGCATTGGAATTTGAAAGGGTTGTTAGTAAGCATGTGTACAATCATGATATCCTATCAACTAATGGGGAGGATGGGGCTTTTGATGTTCTTTTGGGGAAAACAACATTGTTTCCTCCAAATATTCTGATGGAACATAACGTCCCTGTATATAAGGCTGTTCAAGAACCTGGGGAGTTTGTAATTACTTTCCCCAGAGCATACCATGCTGGATTTAGCCATGGCTTCAATTGTGGTGAGGCTGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTGTTGCTAGCCGGCGGTACACACATCTTAATAGGATGCCTCTACTTCCTCATGAAGAACTCCTGTGTAAAGAAGCAATGCTTCTATACACAAGTTTGGAATTTGAAGATGTAGAGTATTCACCTGCAGACTTAGTCTCACATCATGCCATCAAGATGTCTTTTGTTAGTCTGATTCGCTTTCAACATTGTGCTCGATGGTCTCTGATGAAATCAAAGGCATGCACTGGTGTCTATCCTAATTACCTTGGAACCATTCTCTGCAGTCTATGCAAACGTGACTGCTACATAGCTTATATTAGCTGCAGCTGTCATGGACATCCAGTGTGCCTTCGCCACCCTATCGAGTCACTTGACGTCTCATGTGGGAATAATTGCACCCTGTTTTTGCGGGATGATGTTGTGGAAATGGAAGCTGCAGCCAAGAAGTTTGAGCAGGAAGGGGAGATATTAGATGAGATCCACAGACAAGCTAAGGACAGGGACGAGTCTTACTTGAATCCACTGTCAATTATATTTCAGAAAGCTGAAGAGGATGGATACACTCCTTATTGCGAGATAAAAGTTGACTTGGACCCTGTACCTGCCAATGCTGGTCGGGTTCGATCTCAAGATCAAGGTCGTGTATGTAATAGTGAACCTACTATATTTAGGTGTTTTACTGACAATATTAATTTCAGACAATCTGATCCTTCACTTTGTCGTGAGGCATCATCTCTTTGCTCATCATTTATAGAGCCAATGGAGACCTCTTGTGCAGCAAGTCATGCACAAAGTTTCGCTAAGTCAGAGCTGGGGAACAATACTGATTCTGATAAGCTGTCTCAAGGAGTAATGCACTGTGCCTATGAGTCTTCTCCATCCTTTCCAACATCTGAAAACTGCTCAAGCGCACAGGCAGGCGGTACTCCTAAATCAGAGACGTGGCCTCTTGTTGATCCAGAAAGCGATGGTTCTGATTCAGAAATATTTAGGGTTAAGCGGCGCCCTTTGAAGGTGAACAAGAAAGGCTTGAATGACAGCACATCGTCAAAGCATTCCTCACATCAGGGTCTCAAAAGATTGAAGAAACTCCAACCGAATGTTAGATGTGGTCAATCCGCTTCATCAGATGGTTCCAAAAAAGTCAACAAACCGATTTTAAAAGTTTACCCTAACCCTATCCCTAACAATTGCGAAGAATCTGCAGAGAGTGATTCAACAGTCAGATCATCCTCCAAAAGAAGTCCCATCCCTATCTCCATAAAGTTCAAAAGATCATCTGCTCATGGAGAATCAAAGAGTAGAAGACAATTAGAAAACCATAGATATGATCTCGGAAGGCCCATTAGGGACCTCCCTCCTTTAGAGATCAGGCTGAAGCAGATTAAAGTCAGAGGCCCGTCCCTTTTAGGGTCCTCATCAGAAGGCAGGTTGCATTGA 2652 42.65 MVEGRICSAKEAKNGIEFLKRKRLQRMKSQTVAEIIPVSNMMARSGGDALKASASCGMRLLGNADSLSWPSSSNGKDSFPKCKVDKFETSSLEWIEKIPECPVYRPTKEEFEDPLVYLQKIAPEASKYGICKIVSPLSAFVPAGVVLMREKAGFKFTTRVQPLRLAEWDTDDRVTFFMSGKNYTFCEFEKLANKVFSRRYCSSGRLTAAYLEKEFWQEIACGKTESVEYACDVDGSAFSSSLSDELGKSKWNLKKLSRLPKSILRLLENAIPGVTDPMLYIGMLFSMFAWHVEDHFLYSINYHHCGASKTWYGIPGQAALEFERVVSKHVYNHDILSTNGEDGAFDVLLGKTTLFPPNILMEHNVPVYKAVQEPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYTHLNRMPLLPHEELLCKEAMLLYTSLEFEDVEYSPADLVSHHAIKMSFVSLIRFQHCARWSLMKSKACTGVYPNYLGTILCSLCKRDCYIAYISCSCHGHPVCLRHPIESLDVSCGNNCTLFLRDDVVEMEAAAKKFEQEGEILDEIHRQAKDRDESYLNPLSIIFQKAEEDGYTPYCEIKVDLDPVPANAGRVRSQDQGRVCNSEPTIFRCFTDNINFRQSDPSLCREASSLCSSFIEPMETSCAASHAQSFAKSELGNNTDSDKLSQGVMHCAYESSPSFPTSENCSSAQAGGTPKSETWPLVDPESDGSDSEIFRVKRRPLKVNKKGLNDSTSSKHSSHQGLKRLKKLQPNVRCGQSASSDGSKKVNKPILKVYPNPIPNNCEESAESDSTVRSSSKRSPIPISIKFKRSSAHGESKSRRQLENHRYDLGRPIRDLPPLEIRLKQIKVRGPSLLGSSSEGRLH 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3343402 3350885 - Conep08aG0050600.1 Cone8ag0485 443034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0485 883 ProSiteProfiles JmjN domain profile. 101 142 IPR003349 -
Cone8ag0485 883 SMART cupin_9 245 418 IPR003347 -
Cone8ag0485 883 SMART JmjN_1 100 142 IPR003349 -
Cone8ag0485 883 MobiDBLite consensus disorder prediction 830 853 - -
Cone8ag0485 883 MobiDBLite consensus disorder prediction 801 821 - -
Cone8ag0485 883 FunFam Lysine-specific demethylase isoform A 96 445 - -
Cone8ag0485 883 MobiDBLite consensus disorder prediction 698 714 - -
Cone8ag0485 883 Pfam JmjC domain, hydroxylase 278 401 IPR003347 -
Cone8ag0485 883 Gene3D Cupin 101 457 - -
Cone8ag0485 883 Pfam C5HC2 zinc finger 498 549 IPR004198 -
Cone8ag0485 883 MobiDBLite consensus disorder prediction 698 853 - -
Cone8ag0485 883 SUPERFAMILY Clavaminate synthase-like 181 434 - -
Cone8ag0485 883 ProSiteProfiles JmjC domain profile. 248 418 IPR003347 -
Cone8ag0485 883 Pfam jmjN domain 102 134 IPR003349 -
Cone8ag0485 883 PANTHER LYSINE-SPECIFIC DEMETHYLASE 66 779 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0485 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0485 Cone-Chr12:3169261 Cone8ag0485 Cone-Chr8:3343402 0 dispersed
Cone5ag0347 Cone-Chr5:1480823 Cone8ag0485 Cone-Chr8:3343402 2.68E-53 dispersed
Cone8ag0485 Cone-Chr8:3343402 Cone9ag1086 Cone-Chr9:6282421 1.38E-44 dispersed
Cone8ag0485 Cone-Chr8:3343402 Cone2ag0949 Cone-Chr2:35142677 3.08E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46657 PF09335 SNARE_assoc 1.60E-15 No_clan Cone TR