Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0486 ATGTATGGGGATTGCCAAGTGATGTCAAGCATGGGAGGAAACGTAGTTTCCACAGAAAACCTATTTTCTTCGCCGATCCAAAACCCTAATAATAACTTCAACTTCATGTCCACTATTCCTTTCCAACAGTTCCCCCCTATTTCTCTTAAAGAAGAAAGTGGGATTTTGAGATCATCTGGGAAGGAAGAAATGGAGAGTGGTGGGTCTGGAAGTGAACTACAAGTTGAAGAAAATGCTGGAAACATTATTGAACAGAACAGTACTGATCAGCAGCAGCTTCTCTCTAAGAAGAAACGATATCATCGTCACACCGCTCGCCAGATCCAAGAGATGGAAGCATTGTTTAAGGAATGTCCCCACCCAGATGACAAGCAAAAGATGAGACTTAGCCAAGATCTTGGCCTTAAGCCCCGCCAAGTCAAGTTCTGGTTCCAAAACCGGAGGACCCAGATGAAGGCACATCAAGACCGATCAGAAAATGTGATACTAAGAGCAGAGAATGAGACCTTGAAGAATGAGAATTACAAATTACAAACGGCCATTAGAAGTATAATGTGCCCTAATTGTGGTGGTCATGGCATCCTCGGAGAGCCTAACTTGGACGATCAGCAGCTTCGCCTCGAAAATGCTCGCCTGAGAGAAGAGTTGGAGCGAGTTTGCTGTTTGACGTCAAGATACTCGGGCCGGCCAATGCAAATTATTGGTCAAGCTCCTCCACAATTCATGCCCCCGTCATTGGATTTAGACATGAACATATATTCAAGGCAATTTCAGGACCCAATCAATGTCTCTTCAACTCACCATCATGACTTTATGTCCTCACCAATGCCTCCTACTTTGTTCCCTAGTACTAGTGCTCATGATCATCATCAAGTTTCAAGCTATGCTCATCATGGTCAAAATGGTATTAACTTAATATTAATGGAAGAGGAAAAATCACTTGCCAGTGAGCTTGCTGTGTCCTCCATGAATGAGTTTGTCAAGATGTGTCAAGCTAGTGACCCTCTTTGGATTAGAGAGAATGAAAGTGGTAAAGAAGTCCTTAATGTGGAAGAACAGGCTAGATTATTTCCATGGCCGTTGAACCATCTCAAACAACATTCTAATGAGTTGAGGACCGAAGCTACCCGTGATAGTGCTGTCGTAATAATGAATAGCGTCACTCTTGTTGATGCTTTCCTCGATGCTGGTAAATGGATGGAGTTGTTTCCTTCAATTGTTGCTAGAGCAAAAACTGTTCAGGTGATCTCACCAAGTTCTTCAGCTAGTGGTTCCCTTCAGCTGATATATGCAGAATTGCAAGTACTTTCACCACTGGTACCAACTCGAGAGGCATATTTTCTTCGCTATTGCCAACAGAATGCCGAAGAGGGAACATGGGCAATTGTTGATTTTCCGATAGATAGTTTCCATGACAATCTTCAACCTTCATTCCCTAGATACAAGAGAAGGCCTTCTGGTTGCATTATACAAGACATGCCTAATGGTTACTCAAGGGTTACATGGTTAGAGCATGCAGAGATAGAGGAGAAGCCTGTTCATCAGATCTTTGGTGAATTAGTGTACAGTGGGATGGCGTTTGGAGCCAAACGCTGGTTAGCTGTTTTACAGCGACAATGTGAGAGGATGGCAAGCCTCATGGCTAGAAATATTTCTGATCTTGGAGTGATACCAACCCCAGAAGCAAGAAAGAACTTAATGAAACTAGCACAAAGGATGATAAGAACATTCAGTGTTAACATGAGCACTTCAGGCGGGCAGTCATGGACTGCTATATCGGACTCTCCTGATGACACAGTTAGAATCACGACAAGAAAAGTCGTGGAACCTGGTCAACCAACCGGAGTTATTCTCAGTGCCGTTTCCACCACTTGGCTTCCTTATTCTCATTCCCATGTCTTCGATCTTCTTAGAGATGAACGCCGTAGATCTCAGTTGGAGGTGCTATCTAATGGAAATTCTTTACATGAGGTAGCTCACATTGCCAACGGCTCTCATCCTGGAAACTGTATTTCTCTCCTTCGCATCAATGTAGCAAGCAACTCATCCCAACAAGTAGAACTAATGCTACAAGAAAGCTGCACCGACCAATCAGGAAGCCTCGTGGTCTACACCACCATAGACGTTGACTCGATCCAACGTGCAATGAACGGCGACGACCCCTCATGCATTCCTCTCCTCCCATTGGGGTTTGTAATAGTACCTGTTGGATCTTCTACAAACGACAACAACATGATAACATCGCCACCCCTGTACGATCACGATGGGGCGGGAGTGTCCTCCGCCACCCCGGCCATGAATTCTTCCGGCTGCCTTTTGACGGTGGGGCTGCAAGTTCTTGCTAGCACAATCGCGTCATCAAAACTCAACCTCTCTAGTGTGAACGCAATCAACAACCACTTGTGTAACACGGTCCATCAGATCAATGCGGTTCTTAATTCTGGAAGCTCTGCTAGCACTGAACCGGCCGGTTCATCGCCCAAGGATTTGTAG 2493 44.89 MYGDCQVMSSMGGNVVSTENLFSSPIQNPNNNFNFMSTIPFQQFPPISLKEESGILRSSGKEEMESGGSGSELQVEENAGNIIEQNSTDQQQLLSKKKRYHRHTARQIQEMEALFKECPHPDDKQKMRLSQDLGLKPRQVKFWFQNRRTQMKAHQDRSENVILRAENETLKNENYKLQTAIRSIMCPNCGGHGILGEPNLDDQQLRLENARLREELERVCCLTSRYSGRPMQIIGQAPPQFMPPSLDLDMNIYSRQFQDPINVSSTHHHDFMSSPMPPTLFPSTSAHDHHQVSSYAHHGQNGINLILMEEEKSLASELAVSSMNEFVKMCQASDPLWIRENESGKEVLNVEEQARLFPWPLNHLKQHSNELRTEATRDSAVVIMNSVTLVDAFLDAGKWMELFPSIVARAKTVQVISPSSSASGSLQLIYAELQVLSPLVPTREAYFLRYCQQNAEEGTWAIVDFPIDSFHDNLQPSFPRYKRRPSGCIIQDMPNGYSRVTWLEHAEIEEKPVHQIFGELVYSGMAFGAKRWLAVLQRQCERMASLMARNISDLGVIPTPEARKNLMKLAQRMIRTFSVNMSTSGGQSWTAISDSPDDTVRITTRKVVEPGQPTGVILSAVSTTWLPYSHSHVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQQVELMLQESCTDQSGSLVVYTTIDVDSIQRAMNGDDPSCIPLLPLGFVIVPVGSSTNDNNMITSPPLYDHDGAGVSSATPAMNSSGCLLTVGLQVLASTIASSKLNLSSVNAINNHLCNTVHQINAVLNSGSSASTEPAGSSPKDL 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3377935 3384736 - Conep08aG0050700.1 Cone8ag0486 443035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0486 830 Gene3D - 323 542 IPR023393 -
Cone8ag0486 830 FunFam Homeobox-leucine zipper protein HDG1 83 170 - -
Cone8ag0486 830 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677(InterPro)
Cone8ag0486 830 SUPERFAMILY Homeodomain-like 88 154 IPR009057 -
Cone8ag0486 830 CDD START_ArGLABRA2_like 312 541 - -
Cone8ag0486 830 Gene3D - 81 166 - -
Cone8ag0486 830 Pfam Homeodomain 97 152 IPR001356 GO:0003677(InterPro)
Cone8ag0486 830 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone8ag0486 830 CDD homeodomain 97 155 IPR001356 GO:0003677(InterPro)
Cone8ag0486 830 SMART START_1 317 542 IPR002913 GO:0008289(InterPro)
Cone8ag0486 830 ProSiteProfiles START domain profile. 308 545 IPR002913 GO:0008289(InterPro)
Cone8ag0486 830 SMART HOX_1 95 158 IPR001356 GO:0003677(InterPro)
Cone8ag0486 830 SUPERFAMILY Bet v1-like 578 809 - -
Cone8ag0486 830 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 813 IPR042160 -
Cone8ag0486 830 SUPERFAMILY Bet v1-like 309 544 - -
Cone8ag0486 830 Pfam START domain 318 542 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1342 Cone-Chr3:32391730 Cone8ag0486 Cone-Chr8:3377935 3.46E-30 dispersed
Cone8ag0486 Cone-Chr8:3377935 Cone8ag1442 Cone-Chr8:11179665 1.79E-194 dispersed
Cone12ag0484 Cone-Chr12:3140093 Cone8ag0486 Cone-Chr8:3377935 0 wgd
Cone14ag0331 Cone-Chr14:1544963 Cone8ag0486 Cone-Chr8:3377935 1.39E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46658 PF09335 SNARE_assoc 1.60E-15 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0486 - - - 0.0