Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0496 ATGGGTAGCAGCGAGAAGGACAAAGACAAACCAGCTAAGGAGAGAGAGATACATAAAGAGTCAAAGTCAACCCCAATTACTACACAGGAACAGCCTTCTACTATAAGCCCAGGCACAGTGAATCCTGACTGGTCAGGATTTCAGGCATATTCTCCTGTACCTCCACATGGATTCTTGGCATCGAGTCCTCAAGCTCACCCGTATATGTGGGGTGTCCAGCCGGTTATGCCTCCTTATGGAACCCCTCCCCATCCGTATGTTGCAATGTATCCTCATGGTGGCATATACCCGCATCCATCCATGCCTGTGGGACCATATCCTTTTAGCCCGTTTGCTGTACCTTCTCCAAATGGTGTTGTAGAGGCATCTGGTAATACACTAGGTAGCTTGGATGGAGATGGTAAGCCATCTGAGGTGAAGGAAAAATTGCCCATTAAAAGATTGAGAGGAAGCTTGGGTAGTTTAAATATGATTACAGGGAAAAACAATGAGCTTGGTAGAACATCAGGGCCATCTGCCAATGGAACTTGCTCTAAAAGTGCTACAAGTGCGAGTGATGGTACTAGTGAAGGAAGTGATGGAAATTCTGAGAATGATTCAGATTTACAACTTAAGTCGGGTAGTGGGCAAGACTCTTTGGAAGGCGAAGCCAATCAGAATGGAGGATCGAATATACCTCGTTCAAAGGTGAATCGATCAAAGGCCATCTTGCCTACCCCACCAGTTATTAGTCCAACTACCAACTTGAATATTGGAATGGATTATTGGGTTTCTCCAACATCATCTGCACTTCGCGGGAAGGCCCCTTCTACTCCGGTTCCAGGAGGAATGAGTGGATCACGAGATGGGACTCGATCACAGCTTTGGCCACAGGATGAAAGAGACCTTAAAAGACAGAGAAGGAAGCAATCAAATAGGGAATCAGCTCGGCGATCACGGTTGCGTAAGCAGGCCGAATGTGATGAGCTAGCCATTCGTGCTGAAGCCTTGAGAGAAGAAAATGCAAGTCTTACATCCGAAGTGAATAGAATGAGGAGCGAGTATGAACAGCTTCTTCTAGAGAATTCCTCTCTAAAGGAGAGATTAGAAGAAAATCCCAGAAATGAAGACTCGAGATCTGGCCCGAACGATAACAAAGAGTCAGAGCTGACACCAGAGGGTATTTAA 1167 46.02 MGSSEKDKDKPAKEREIHKESKSTPITTQEQPSTISPGTVNPDWSGFQAYSPVPPHGFLASSPQAHPYMWGVQPVMPPYGTPPHPYVAMYPHGGIYPHPSMPVGPYPFSPFAVPSPNGVVEASGNTLGSLDGDGKPSEVKEKLPIKRLRGSLGSLNMITGKNNELGRTSGPSANGTCSKSATSASDGTSEGSDGNSENDSDLQLKSGSGQDSLEGEANQNGGSNIPRSKVNRSKAILPTPPVISPTTNLNIGMDYWVSPTSSALRGKAPSTPVPGGMSGSRDGTRSQLWPQDERDLKRQRRKQSNRESARRSRLRKQAECDELAIRAEALREENASLTSEVNRMRSEYEQLLLENSSLKERLEENPRNEDSRSGPNDNKESELTPEGI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3532227 3537670 - Conep08aG0051700.1 Cone8ag0496 443045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0496 388 Gene3D - 296 351 - -
Cone8ag0496 388 Coils Coil 313 361 - -
Cone8ag0496 388 MobiDBLite consensus disorder prediction 155 230 - -
Cone8ag0496 388 Pfam Disordered region downstream of MFMR 141 263 - -
Cone8ag0496 388 MobiDBLite consensus disorder prediction 287 302 - -
Cone8ag0496 388 MobiDBLite consensus disorder prediction 24 46 - -
Cone8ag0496 388 MobiDBLite consensus disorder prediction 262 319 - -
Cone8ag0496 388 Pfam bZIP transcription factor 293 355 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0496 388 MobiDBLite consensus disorder prediction 355 388 - -
Cone8ag0496 388 Pfam G-box binding protein MFMR 16 102 IPR012900 -
Cone8ag0496 388 PANTHER G-BOX-BINDING FACTOR 3-RELATED 30 375 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cone8ag0496 388 MobiDBLite consensus disorder prediction 1 47 - -
Cone8ag0496 388 CDD bZIP_plant_GBF1 298 348 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0496 388 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 295 358 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0496 388 SUPERFAMILY Leucine zipper domain 296 351 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0496 388 SMART brlzneu 293 357 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0496 388 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag0496 388 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 300 315 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0496 388 MobiDBLite consensus disorder prediction 355 379 - -
Cone8ag0496 388 MobiDBLite consensus disorder prediction 123 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0400 Cone-Chr14:1855256 Cone8ag0496 Cone-Chr8:3532227 1.83E-11 dispersed
Cone6ag1607 Cone-Chr6:12444611 Cone8ag0496 Cone-Chr8:3532227 4.70E-39 dispersed
Cone8ag0496 Cone-Chr8:3532227 Cone9ag1533 Cone-Chr9:11169867 2.47E-41 dispersed
Cone12ag0558 Cone-Chr12:4015990 Cone8ag0496 Cone-Chr8:3532227 3.11E-132 transposed
Cone8ag0602 Cone-Chr8:5238875 Cone8ag0496 Cone-Chr8:3532227 1.35E-131 transposed
Cone12ag0494 Cone-Chr12:3332470 Cone8ag0496 Cone-Chr8:3532227 4.80E-216 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46660 PF03479 PCC 2.40E-28 CL0615 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0496 K09060 - mdm:103436860 528.094