Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0499 ATGAGGACACCAGTCCTTAACCAAAATCCTCTCTCTTTACCATCAAAAGATCCACCACCAGTACCACCACAACAAAGCCCAGAAGCAGTTTTGAGGTTGGAGGATCAACGATGGCTGCTGTCCCTCTTGAAGAAGTGCAACAGTATGAAAGAACTAAACCAAGTTCACTGCCAATTCCTCAAGTTAGGATTCTTCTTTGATTCTTTCTGTGCAAGAAATTTGATTTCTACTTGTGCTCTCTCAAATTGGGGCAGTATGGACTATGCTTGCTCGGTTTTCGAACAAATACATGAACCAAACACTTTCGATTTCAACACAATGATTAGAGGATATGTTAAGGAATTGAATTTTGAAGAGTGTTTATATCTTTACAAGGAAATGCTTCGAAGGGAAATTCAGCCAGATAATTTCACTTATCCTGTTCTTCTCAAGGCTTGTTCCAAGTTGGGAGCAATAAAGGAAGGAATGCAAATCCATGACCATATAATCAAGCTTGGACTTGAAAATGATGTTTTTGTGCAAAATAGTTTGATTTACATGTATGGCAAGTGTAACGAGATCGAACAATCTCTTTCCATTTTCAAGCATATCGATCGAAAAAGTGTTGCTTCATGGAGTGCTATAATTTCAGCTCATGCTACTATTGGGTTATGGTGGGAGTGTTTGGAGTTATTTGAAAGAATGAGCGGTGAAGGATTTTGTAGGGCTGAAGAGAGCTTATTAGTGAGCTTGATTTCGGCTTGTACCCATTTAAGTGCACTTGATTTAGGAAGATGCATTCATGGGGCTCTCTTGAGAAATATTAAAGAACTCAATGTTACAATTGAGACATCCTTAATAGACATGTATGTAAAATGTGGGTGTTTAGAGAAAGGATCGAGTCTATTCCGGAAAATGGAAAAAAAGAATGAGTTATCTTATAGTGTGATGATATCGGGTTTAGCAATAAACGGGCAAGGTAGAGAAGCATTAAGGGTTTTCAGTCAGATGGTTGAAGAAGAAGGGTTGGTTCCGGACGAGGTGGTCTATGTGGGTGTTCTTAATGCTTGTAGTAATGCCGGCTTGGTCAAGGAAGGATTATATATTTTCGACAAGATGAAAACCAAACATGGGATTGAACCAATGATGGAACATTATGGTTGTATGGTAGATCTTCTGGGTAAAGCTGGAATGCTTGAGGAAGCATTTGAGTTTATCAATAAAATGCCGGTGAATCCAAATGACATTGTGTGGAGGAGTCTTCTTAATGCTTGTAGGATTCATAATAATTTGAAACTCGGAAAAATTGTGGCTAAAATCCTATTCCAGTTAAACCCGAACAATCCGGGTGATTATCTTGTAATCTCTAACATGTACGCAAAAGCTCAAGAATGGGAAAGGGTGGGTAAGATTATGACGGAAATGGCTAACAAGGGTTTGGTCCAAACACCCGGGTTTAGCTCTGTGGAGGTGAATAGAAGAGTTTATCGGTTCGTTTCAATGGACAGGTCCAACCGTACTTGGTTCGGAACTTATGAGATGATTCATCAAATAGAGTGGCAATTGAGATTTGAAGGGTATTTGGCAGATACATCACAAGTGGTGATGTTTGATGAAGAAGAAGTGGGGAAAGAGGAAGAGAAGAGAGAGAGATTGAAAGGGCATAGTCAAAAATTGGCTATAGCCTTTGCATTGATAAACACATCAAAAGGGTCTAAGATAAAGATAATTAGGAATGTGAGGATGTGCAGTGATTGTCATACGTACACTAAATTCATTTCAAGTATCTACGGGAGAGAGATTGTTGTAAGAGATCGAAACCGGTTCCATTGTTTTAAAAATGGAACTTGCTCTTGTGGAGATTACTGCTTGAAACTCCAGTTTGAGTCTAAAATCAAATCAGACCCACTAAACTCCAGTTTGATCAAAAGCTGA 1914 38.92 MRTPVLNQNPLSLPSKDPPPVPPQQSPEAVLRLEDQRWLLSLLKKCNSMKELNQVHCQFLKLGFFFDSFCARNLISTCALSNWGSMDYACSVFEQIHEPNTFDFNTMIRGYVKELNFEECLYLYKEMLRREIQPDNFTYPVLLKACSKLGAIKEGMQIHDHIIKLGLENDVFVQNSLIYMYGKCNEIEQSLSIFKHIDRKSVASWSAIISAHATIGLWWECLELFERMSGEGFCRAEESLLVSLISACTHLSALDLGRCIHGALLRNIKELNVTIETSLIDMYVKCGCLEKGSSLFRKMEKKNELSYSVMISGLAINGQGREALRVFSQMVEEEGLVPDEVVYVGVLNACSNAGLVKEGLYIFDKMKTKHGIEPMMEHYGCMVDLLGKAGMLEEAFEFINKMPVNPNDIVWRSLLNACRIHNNLKLGKIVAKILFQLNPNNPGDYLVISNMYAKAQEWERVGKIMTEMANKGLVQTPGFSSVEVNRRVYRFVSMDRSNRTWFGTYEMIHQIEWQLRFEGYLADTSQVVMFDEEEVGKEEEKRERLKGHSQKLAIAFALINTSKGSKIKIIRNVRMCSDCHTYTKFISSIYGREIVVRDRNRFHCFKNGTCSCGDYCLKLQFESKIKSDPLNSSLIKS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3553662 3556260 - Conep08aG0052000.1 Cone8ag0499 443048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0499 637 MobiDBLite consensus disorder prediction 1 26 - -
Cone8ag0499 637 FunFam Pentatricopeptide repeat-containing protein 116 271 - -
Cone8ag0499 637 Pfam DYW family of nucleic acid deaminases 520 615 IPR032867 GO:0008270(InterPro)
Cone8ag0499 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 374 IPR002885 -
Cone8ag0499 637 Pfam PPR repeat family 99 148 IPR002885 -
Cone8ag0499 637 Pfam PPR repeat family 303 352 IPR002885 -
Cone8ag0499 637 NCBIfam pentatricopeptide repeat 104 135 IPR002885 -
Cone8ag0499 637 NCBIfam pentatricopeptide repeat 306 340 IPR002885 -
Cone8ag0499 637 NCBIfam pentatricopeptide repeat 277 303 IPR002885 -
Cone8ag0499 637 NCBIfam pentatricopeptide repeat 341 374 IPR002885 -
Cone8ag0499 637 NCBIfam pentatricopeptide repeat 379 402 IPR002885 -
Cone8ag0499 637 Gene3D Tetratricopeptide repeat domain 35 200 IPR011990 GO:0005515(InterPro)
Cone8ag0499 637 Gene3D Tetratricopeptide repeat domain 239 514 IPR011990 GO:0005515(InterPro)
Cone8ag0499 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Cone8ag0499 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Cone8ag0499 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 338 IPR002885 -
Cone8ag0499 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Cone8ag0499 637 PANTHER OS07G0578800 PROTEIN-RELATED 237 498 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone8ag0499 637 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 276 505 - -
Cone8ag0499 637 Pfam E motif 421 483 IPR046848 -
Cone8ag0499 637 Pfam PPR repeat 175 200 IPR002885 -
Cone8ag0499 637 Pfam PPR repeat 378 403 IPR002885 -
Cone8ag0499 637 Pfam PPR repeat 204 233 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0499 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0499 Cone-Chr8:3553662 Cone17ag1027 Cone-Chr17:7809979 2.49E-97 dispersed
Cone12ag0499 Cone-Chr12:3378597 Cone8ag0499 Cone-Chr8:3553662 2.19E-72 transposed
Cone12ag0498 Cone-Chr12:3378054 Cone8ag0499 Cone-Chr8:3553662 1.84E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187