Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0500 ATGGAGAATGAAGAGAGAGAGAGGTGGAGAGAATTAGTAAGAAAAATGCTTCCACCTGGATCTTCTCTCCCAGAAGATGCTAACCTCGATTACTCCATTGCAATGGAGTATGAGGGCCCACTTGTTCTACGTGAAATTCCTAGAGTGGAACCACTGGATGTAAATTCCCATAATCAAATCCCCTTAGCAGAACCTCTCTCCGAATCAAGAAGATCCGTTTCAAATCTGGGCCCACCAATAGTCGAGCCTATACCTTTACCAATATCACGTATAGCTGGAGTAACAACCTTGCCCGATCAAAGTCCGAGGTTGTCTCTAAGTTCAGAATCTGTCGTTTCCGTTTTACAAAACCGGGAATCTTCTTCCCCTTCACCATCTGCCTCTCCTGGATCAGTCCATAACCCTCAAAAACAAGCGGGTCATAATGAGGTGAGGCGGGGCCCGGTTGTAACTTTCAATACGATTGAGAGAATGGATAGGAAAGAAGTTATGGTTGAAAAGCCGATCTATCCGGGATATACTGGAGTTTCAAAGGAGAAGAAAAGTAGTAAGAAGAAGAAGAGTAGGGTTTGCTATAGGTGTGGAAAAGGGAAGTGGGAGAGTAAGGAGTCCTGTTTGGTTTGCGATTCAAAGTATTGTAGTAGTTGTGTGCTTAGGGCAATGGGGTCTATGCCTGAAGGAAGAAAGTGTGTGACTTGTATTGGTGAGCCAATCGATGAATCGAAGAGGTTGAGGTTGGGGAAGAATTCTAGGCTTTTGTCGAGGTTGTTAAGTCCTTTGGAAGTTAAGCATGTTATGAAAGCGGAGAGAGAGTGCACAGCTAATCAGCTTAGACCCGAGCAGGTTATTGTGAATGGTTTAGCTTTGAAGCTGGAAGAGATGGCAGAATTACTAGGATGCCCTTTGCCTCCGAGGAAGTTGAAGCCGGGTAGATATTGGTATGACAAAGAATCGGGTCTTTGGGGAAAAGAAGGAGAAAAACCGGACAGAATCATAAGTTCAAATTTGAACTTTACTGGTAAGCTTAGCCCTCATGCAAGCAATGGAAATACTGAAGTTTACATAAATGGACGGGAGATTACAAAAATTGAATTGAGGGTGCTAAAGTTGGCAAATGTTCAATGTCCTCGTGACACTCATTTTTGGGTCTATGATGATGGTCGATATGAAGAGGAAGGTCAGAATAATATCCGAGGAAACATTTGGGAAAAGGCATCAACACGGCTTATATCTGCTTTGTTCTCTTTGCCGGTGCCCCATGGACAGCCCCATGGAGTAAGAGATGAAGCTAGTAATTATACTGTGGTTCCAAACTATTTGGAACCGAAAAAGATTCAAAAGCTTCTTCTTCTTGGACTTCATGGCTCTGGAACTAGCACTATCTTCAAGCAGGCAAAGTTTTTGTATGGAAACAGGTTTAGTACAGAAGAGTTGCAGGGGATTAAGCTGATGATCCAGAGTAACATGTATAGATATCTCAGCATTCTACTTGATGGACGAGAACGCTTTGAAGAGGAGGCCATGAAGAGGATGAAAGGACTAGGGTCCTATGAACAGTTCACTCAAGGAGGGAAAGAGGTTGACCCGAATGAAGCTTGTCACTGTGCATACTCTATCAACCCAAGATTGAAGCATTTTTCGGACTGGCTTCTGGATATAATAGCAACTGGAGACTTGGACGCATTCTTCCCTGCTGCTACACGTGAGTATGCTCCTTTAGTTGAAGAGTTGTGGAAAGATCCTGCTATTCAAGAAACTTACAGAAGGAAAGACGAGCTCCATTTCCTCCCAGATGTTGCAGAGTACTTCTTAAGTCGGGCTGTGGAGGTTTCTAGTAATGAATATGAGCCTTTGGAAAGAGATATTCTTTATGCAGAAGGTGTAAGTCAAGGAAATGGCTTGGCTTTCATGGAATTCTCACTAGATGATCGTAGCCCAATGTCTGAAACGTACACGGATAATTTGGAAGTTCCACCCTCACCCCTTGCCAAATTCCAACTTATAAGACTAAATGCAAATGGAATGAACGAAGGATGTAAATGGGTTGAAATGTTTGAAGATGTCCGGGTCGTAGTTTTCTGCGTCGCTCTAAGTGATTTTGACCAAATGCTCCCTACTCCAGAAAATTCCGGTAACGGAACTGTTCTTCAAAACAAAATGTTACAAAGCAAAGAACTTTTTGAGACCATGATCAGACACCCATGTTTCAAAGACACCCCATTTGTTCTGATCCTCAACAAGTATGATATTTTTGAGGAAAAGATCAACCGGGTCCCACTCAGCACATGTGAATGGTTCAACGATTTCAGCCCAGTCCTGGCTCATCAGAGGAACCAGTCCTTGGCCCACCAGGCCTATTACTATGTGGCTATGAAGTTTAAAGACCTTTATGCTTCTCTTACGGTTAGTAGGAGGCTTTTTGTGTCGCAAGCTCGGGCAAGGGACAGGGTTACAGTTGATGAGGCGTTTAAGTATATAAGAGAGGTTGTTAAGTGGGATGAAGAGAAGGAGGAGTATTGTGGTGTCGGAGGACAAGAGGATTCGTTTTATAGTACGGATATGAGCTCCTCTCCGTATATCAGACAAGAATAA 2592 43.29 MENEERERWRELVRKMLPPGSSLPEDANLDYSIAMEYEGPLVLREIPRVEPLDVNSHNQIPLAEPLSESRRSVSNLGPPIVEPIPLPISRIAGVTTLPDQSPRLSLSSESVVSVLQNRESSSPSPSASPGSVHNPQKQAGHNEVRRGPVVTFNTIERMDRKEVMVEKPIYPGYTGVSKEKKSSKKKKSRVCYRCGKGKWESKESCLVCDSKYCSSCVLRAMGSMPEGRKCVTCIGEPIDESKRLRLGKNSRLLSRLLSPLEVKHVMKAERECTANQLRPEQVIVNGLALKLEEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFTGKLSPHASNGNTEVYINGREITKIELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRLISALFSLPVPHGQPHGVRDEASNYTVVPNYLEPKKIQKLLLLGLHGSGTSTIFKQAKFLYGNRFSTEELQGIKLMIQSNMYRYLSILLDGRERFEEEAMKRMKGLGSYEQFTQGGKEVDPNEACHCAYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYRRKDELHFLPDVAEYFLSRAVEVSSNEYEPLERDILYAEGVSQGNGLAFMEFSLDDRSPMSETYTDNLEVPPSPLAKFQLIRLNANGMNEGCKWVEMFEDVRVVVFCVALSDFDQMLPTPENSGNGTVLQNKMLQSKELFETMIRHPCFKDTPFVLILNKYDIFEEKINRVPLSTCEWFNDFSPVLAHQRNQSLAHQAYYYVAMKFKDLYASLTVSRRLFVSQARARDRVTVDEAFKYIREVVKWDEEKEEYCGVGGQEDSFYSTDMSSSPYIRQE 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3559470 3565959 + Conep08aG0052100.1 Cone8ag0500 443049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0500 863 MobiDBLite consensus disorder prediction 108 149 - -
Cone8ag0500 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 832 IPR027417 -
Cone8ag0500 863 CDD G-alpha 459 833 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 SUPERFAMILY FYVE/PHD zinc finger 153 233 IPR011011 -
Cone8ag0500 863 SMART galpha_1 404 842 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 FunFam Extra-large guanine nucleotide-binding protein 3 640 839 - -
Cone8ag0500 863 Pfam G-protein alpha subunit 443 829 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 FunFam Extra-large guanine nucleotide-binding protein 3 475 626 - -
Cone8ag0500 863 Gene3D - 475 626 IPR011025 GO:0007165(InterPro)
Cone8ag0500 863 MobiDBLite consensus disorder prediction 108 138 - -
Cone8ag0500 863 ProSiteProfiles G-alpha domain profile. 444 842 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 SUPERFAMILY Transducin (alpha subunit), insertion domain 473 625 IPR011025 GO:0007165(InterPro)
Cone8ag0500 863 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 261 831 IPR001019 GO:0001664(PANTHER)|GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005834(PANTHER)|GO:0007186(InterPro)|GO:0007188(PANTHER)|GO:0019001(InterPro)|GO:0031683(PANTHER)|GO:0031683(InterPro)
Cone8ag0500 863 PRINTS Alpha G protein (transducin) signature 741 750 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 PRINTS Alpha G protein (transducin) signature 447 462 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 PRINTS Alpha G protein (transducin) signature 688 716 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 PRINTS Alpha G protein (transducin) signature 615 637 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Cone8ag0500 863 Gene3D - 643 838 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0500 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1703 Cone-Chr4:12659874 Cone8ag0500 Cone-Chr8:3559470 1.71E-53 dispersed
Cone6ag1369 Cone-Chr6:10971858 Cone8ag0500 Cone-Chr8:3559470 8.25E-164 dispersed
Cone7ag1619 Cone-Chr7:11001039 Cone8ag0500 Cone-Chr8:3559470 2.23E-56 dispersed
Cone8ag0500 Cone-Chr8:3559470 Cone9ag1298 Cone-Chr9:9750039 4.50E-246 dispersed
Cone19ag0314 Cone-Chr19:2461288 Cone8ag0500 Cone-Chr8:3559470 0 transposed
Cone12ag0501 Cone-Chr12:3391111 Cone8ag0500 Cone-Chr8:3559470 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62