Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0512 ATGATTTCATCAACCTCAATGGTAGCTCCTAACCCAGACTGGTACTCACCAGAAACAGGAACATACAAAAGCAAACACCCCTCCGTAGACCTCCCCTCCGACCCATTTCTAGACCTTGTCTCCTTCATCTTCTCCAAAAAACACGATGGCGTCTTAGCCCTAACCGATTCCTCATCTGGGTATTCCATTTCTTACCCTCAACTCTTCCCTTTCATCAATTCTATGGCTTCGACCCTTCACAAGCTGGGTATTTCACAAGGAGACGTCATTCTCATTTTGCTTCCAAATTCCATTTACTATCCCATCATTTTCCTAGCATCTCTATACTTAGGCGCAATCGTTACTACCATGAATCCTCTCAGTAGTATTTCGGAAATCAAGAAACAGAGTAGTGAATGCAATGTGGTTTTTGCCTTTACTTTACCCGAAAATTTTGAGAAATTAAAAAAACTGGGTATTCCGTCAGTTACGGTTCCAGAAATTCTTACACCTTCCTGCCATATTTTTTCCACCGATTTCGATCCAATCAAAAGACCAGTGATTAGGCAGAAAGATACAGCTGCAATATTGTACTCGTCAGGAACCACTGGTTTGAGCAAAGGGGTTATCTTAACCCATGAAAATTTTATTTCCATGGTTGAGCTTTTTGTACGATTTGAAGCTACTCAATACGACTATTCAAGTTCAAGCAATGTTTTCTTAGCTGTTTTGCCAATGTTTCATGTGTATGGACTATCTCTTTTCGTGATGGGATTATTGTCATTGGGTTCTAGTATTGTTGTGATGAGAAAGTTTAACTTGGATGAGGTGGTAGAGGCTATTGGTTTGCACAGAGTTACTCATTTTCCGGTGGTTCCGCCTATTTTATCGGCTTTGACAAATCAAGCTAAGAAGGGCTTTAATGGTGATAGCAGCTTGAAGAGTTTGAAACAAGTTTCTTGTGGAGCAGCTCCTCTGAGTAGGAAAGTTATAGAGGAGTTTGTTCAGTTTCTCCCTCATGTTGATTTCATTCAGGGTTATGGGATGACTGAATCTACAGCAGTAGGAACTAGAGGTTTCAATACTAAAGAGGTTTGGAATTTTTCTTCAATAGGACTCTTAGCTCCAAGCATGGAGGCTAAAATAGTAGATTGGAACAGTGGTACTTTCTTGCCTCCTGGCAGTTGTGGTGAGCTTTGGTTACGTGGTCCTGCTATTATGAAAGGATACTTGGATAATGAGGAGGCAACTAGGTTAACAATAGATGACGAGGGTTGGCTTCATACTGGAGACATTGTCTATTTTGATCAAGATGGGTACTTGTATATTTCTGATCGTTTGAAAGAGATTATCAAATACAAAGGCTTTCAGATTGCTCCAGCTGATTTAGAAGCTGTGTTGATTTCACATCCTGAGATTCTTGACGTTGCTGTTACAGCTGGCATGGATGAAAAATGTGGGGAGATACCAGTTGCATTTGTGGTAAAGAAACCAGGAAGTGCGCTCTCTCAAGAATCCATTATAGACTTTGTAGCCAAACAGGTTGCACCATACAAGAAGGTAAGAAAGGTAGTCTTTACACAATTGATCCCAAAATCTCCTGCCGGGAAAATTCTCCGAAGAGCTCTCAAAAACTGTTTGGCTTCTAAACTATAA 1635 40.55 MISSTSMVAPNPDWYSPETGTYKSKHPSVDLPSDPFLDLVSFIFSKKHDGVLALTDSSSGYSISYPQLFPFINSMASTLHKLGISQGDVILILLPNSIYYPIIFLASLYLGAIVTTMNPLSSISEIKKQSSECNVVFAFTLPENFEKLKKLGIPSVTVPEILTPSCHIFSTDFDPIKRPVIRQKDTAAILYSSGTTGLSKGVILTHENFISMVELFVRFEATQYDYSSSSNVFLAVLPMFHVYGLSLFVMGLLSLGSSIVVMRKFNLDEVVEAIGLHRVTHFPVVPPILSALTNQAKKGFNGDSSLKSLKQVSCGAAPLSRKVIEEFVQFLPHVDFIQGYGMTESTAVGTRGFNTKEVWNFSSIGLLAPSMEAKIVDWNSGTFLPPGSCGELWLRGPAIMKGYLDNEEATRLTIDDEGWLHTGDIVYFDQDGYLYISDRLKEIIKYKGFQIAPADLEAVLISHPEILDVAVTAGMDEKCGEIPVAFVVKKPGSALSQESIIDFVAKQVAPYKKVRKVVFTQLIPKSPAGKILRRALKNCLASKL 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3651093 3655467 - Conep08aG0053300.1 Cone8ag0512 443061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0512 544 Gene3D - 442 542 IPR045851 -
Cone8ag0512 544 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Cone8ag0512 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 537 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
Cone8ag0512 544 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Cone8ag0512 544 Pfam AMP-binding enzyme C-terminal domain 456 530 IPR025110 -
Cone8ag0512 544 Gene3D - 20 441 IPR042099 -
Cone8ag0512 544 SUPERFAMILY Acetyl-CoA synthetase-like 49 540 - -
Cone8ag0512 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 23 441 - -
Cone8ag0512 544 CDD 4CL 31 536 - -
Cone8ag0512 544 Pfam AMP-binding enzyme 48 404 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0378 Cone-Chr5:1607182 Cone8ag0512 Cone-Chr8:3651093 1.25E-135 dispersed
Cone6ag0850 Cone-Chr6:4342476 Cone8ag0512 Cone-Chr8:3651093 7.27E-22 dispersed
Cone7ag1043 Cone-Chr7:8019733 Cone8ag0512 Cone-Chr8:3651093 1.71E-105 dispersed
Cone7ag1922 Cone-Chr7:12291893 Cone8ag0512 Cone-Chr8:3651093 3.66E-68 dispersed
Cone8ag0512 Cone-Chr8:3651093 Cone8ag0733 Cone-Chr8:7361201 7.65E-110 dispersed
Cone8ag0512 Cone-Chr8:3651093 Cone4ag2006 Cone-Chr4:13992231 8.06E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0512 K01904 - mtr:11441228 748.043