Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0518 ATGAAAAGCAAAGTGCTGATAATAGGAGGAACAGGGTACTTAGGGAAGAGGTTGGTGAGGGCAAGTTTAGGGTTAGGGCATGAAACATACGTGCTGATTAGGCCAGAGATAGGAGTCGATATTGAGAAAGTGCAATTGCTATTGTCATTCAAAGAGAAAGGAGCTCATCTAGTCCCTGGCTCTTTCAATGACTACCAAAGCCTTGTTGATGCCGTCAAACTAGTCGATGTCGTTATTTGTGCGGTTGCCGGAGTTCATATCAGGAACCACCAAATTCTTCTTCAGCTCAAGCTCGTTGATGCAATCAATGAAGCCGGAAATGTTAAGAGATTCTTGCCGTCGGAGTTTGGGACAGATCCTGCAAGAATGGAACATGCCATGGAACCAGGAAGAGTGACATTTGATGACAAAATGGCGGTCAGGAAGGCCATTGAGGATGCTCAAATCCCCTTCACTTACATCTCAGCTAACTGCTTTGCTGGTTACTTTCTAGGCGGTCTGTGCCAGCCTGGTAGTATCCTTCCCTCTAGGGATTCTGTTCTCTTACTCGGAGATGGCAATCAGAAAGGGATCTATGTGGATGAAGATGACATAGCCATGTACACTATCAAAAGCATAGATGACCCTCGGACTTTAAACAAGACAGTGTACATTAGGCCCACTAAAAATATCTTATCACAGAGAGAAGTCGTGGAAGTTTGGGAGAAACTAATCGGGAAGGAGTTGAAGAAATCAACCATGTCTGCCCAAGAATTTCTTGCTAATATGAAAGGGCAAGATTACGCAGAGCAAGTTGGGTTAACACATTACTATCACGTGTGTTACGAGGGGTGCCTTGCAAATTTCGAAATTGGCAAGGATGCAGAGGAAGCTACTCAACTCTATCCAGAAATCAAATACACTTCTGTTCAGGAATACATGAAACGCTACGTTTAA 936 43.91 MKSKVLIIGGTGYLGKRLVRASLGLGHETYVLIRPEIGVDIEKVQLLLSFKEKGAHLVPGSFNDYQSLVDAVKLVDVVICAVAGVHIRNHQILLQLKLVDAINEAGNVKRFLPSEFGTDPARMEHAMEPGRVTFDDKMAVRKAIEDAQIPFTYISANCFAGYFLGGLCQPGSILPSRDSVLLLGDGNQKGIYVDEDDIAMYTIKSIDDPRTLNKTVYIRPTKNILSQREVVEVWEKLIGKELKKSTMSAQEFLANMKGQDYAEQVGLTHYYHVCYEGCLANFEIGKDAEEATQLYPEIKYTSVQEYMKRYV 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3690341 3693690 - Conep08aG0053900.1 Cone8ag0518 443067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0518 311 PANTHER PINORESINOL REDUCTASE-RELATED 1 311 IPR050608 -
Cone8ag0518 311 Gene3D - 157 307 - -
Cone8ag0518 311 CDD PCBER_SDR_a 4 306 IPR045312 GO:0016491(InterPro)
Cone8ag0518 311 Pfam NmrA-like family 5 242 IPR008030 -
Cone8ag0518 311 Gene3D - 3 296 - -
Cone8ag0518 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 266 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0518 K21568 - - vvi:100260187 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0927 Cone-Chr7:7265314 Cone8ag0518 Cone-Chr8:3690341 4.42E-12 dispersed
Cone7ag0928 Cone-Chr7:7266167 Cone8ag0518 Cone-Chr8:3690341 6.52E-10 dispersed
Cone8ag0518 Cone-Chr8:3690341 Cone8ag0520 Cone-Chr8:3712897 1.01E-161 dispersed
Cone8ag0518 Cone-Chr8:3690341 Cone8ag0519 Cone-Chr8:3701353 9.56E-160 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0518 . . . . . . . . . . . . . . . . . Cmo19g00215 . . . . . Cpe15g00172 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002260 2 2 2 1 2 2 0 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 1 2 0 2 2 3 6 63