Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0521 ATGCAAGAACCGGAGAGGATTACGCCGACGGCGGAATCGGCACCGACGACGCCAGGGACACCAGGGGGGCCACTATTCTCATCTCTCCACGTGGACTCCCTGTCGTATGATCGAAAGTCAATGCCGCGATGCAAGTGCCTGCCTGTAAATCCTCCGATGTGGGGCCAGCCTCACACATGCTTCATCGACCTTCCTACTCCTTACGTGTCTCTCACCCGCAAGGTAGGAGCTGAGTTCGTAGGAACCTTCATTCTGATATTCGGTGCAACAGCTGGACCGATCGTGAACCAGAAGTACAATGGAGCCGAGACCCTGATTGGTAACGCAGCCTGTGCCGGGCTAGCTGTGATGGCTATAATTCTGTCTATAGGACACATTTCTGGCGCACATTTGAACCCATCGTTGACCATTGCCTTCGCTGTGATGCGCCATTTCCCATGGATCCAAGTTCCCGCGTATATCGCAGCGCAAGTTTCGGGTTCCATTTGCGCCGGATATGCACTCAAGGGCATTTTCCATCCCTTCTTGTCTGGTGGAGTCACTGTGCCTTCTGTTAGCACTGGACAGGCCTTCGCGCTTGAATTCGTTATTACGTTTGTTCTGCTTTTCGTCGTCACTGCTGTGGCAACCGATACGCGTGCGGTGGGTGAGTTGGCTGGAATAGCTGTTGGTGCTACTGTTATGCTCAACATTCTTGTGGCTGGGCCATCAAGTGGTGGGTCAATGAATCCGGTCCGTACGCTTGGCCCAGCGGTTGCAGCGGCGAACTATAGGGAACTTTGGGTCTACCTGGTGGCCCCCACCCTTGGGGCCATCGCCGGGGCGGGGACCTACACTGCCGTGAAGCTCAGAGAAGACCAGGTTACTCCACCAACCCAGGTGAGGAGCTTCCGCCGCTAG 900 55.56 MQEPERITPTAESAPTTPGTPGGPLFSSLHVDSLSYDRKSMPRCKCLPVNPPMWGQPHTCFIDLPTPYVSLTRKVGAEFVGTFILIFGATAGPIVNQKYNGAETLIGNAACAGLAVMAIILSIGHISGAHLNPSLTIAFAVMRHFPWIQVPAYIAAQVSGSICAGYALKGIFHPFLSGGVTVPSVSTGQAFALEFVITFVLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAANYRELWVYLVAPTLGAIAGAGTYTAVKLREDQVTPPTQVRSFRR 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3729290 3734168 + Conep08aG0054200.1 Cone8ag0521 443070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0521 299 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 PRINTS Major intrinsic protein family signature 73 92 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 PRINTS Major intrinsic protein family signature 193 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 FunFam Aquaporin NIP2-1 61 293 - -
Cone8ag0521 299 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Cone8ag0521 299 SUPERFAMILY Aquaporin-like 69 287 IPR023271 -
Cone8ag0521 299 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag0521 299 PANTHER AQUAPORIN NIP2-1 69 284 IPR034294 -
Cone8ag0521 299 Gene3D Glycerol uptake facilitator protein. 64 294 IPR023271 -
Cone8ag0521 299 Pfam Major intrinsic protein 69 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone8ag0521 299 CDD MIP 73 278 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0957 Cone-Chr15:7598646 Cone8ag0521 Cone-Chr8:3729290 1.61E-100 dispersed
Cone5ag1638 Cone-Chr5:11560497 Cone8ag0521 Cone-Chr8:3729290 4.00E-58 dispersed
Cone6ag0938 Cone-Chr6:4829715 Cone8ag0521 Cone-Chr8:3729290 4.55E-62 dispersed
Cone8ag0521 Cone-Chr8:3729290 Cone9ag0941 Cone-Chr9:4650979 4.44E-63 dispersed
Cone8ag0521 Cone-Chr8:3729290 Cone20ag1150 Cone-Chr20:7806133 4.30E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0521 K09874 - csv:101212651 482.641